View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14138_high_25 (Length: 359)
Name: NF14138_high_25
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_high_25 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 5316140 - 5316481
Alignment:
| Q |
1 |
tgttggaaggactggtactggaaaaagtacgcttataagtgctttgtttcgcttagttgagccttcaaaaggtgctattctcatagatagaataaacata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||| | ||||||||| |
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| T |
5316140 |
tgttggaaggactggtactggaaaaagtacacttataagtgccttgtttggcttagttgagccttcaaaaggtgatattctcatagatgggataaacata |
5316239 |
T |
|
| Q |
101 |
tgctcaatcgggttgcaggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctcgaccctctag |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5316240 |
tgctcaatcgggttgaaggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctcgaccctctag |
5316339 |
T |
|
| Q |
201 |
gcctgtactcagatgatgaaatatggaaggtgaattgactaactttaaaagaagttgaattttacatgagccattcaataaaataatatttgatttctat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||| |
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| T |
5316340 |
gcctgtactcagatgatgaaatatggaaggtgaattgactaactttaaaagaagttgaattttacatgagccacacaataatataatatttgatttgtat |
5316439 |
T |
|
| Q |
301 |
atttaggctgtnnnnnnntgtcagcttaaggaaacaatcagc |
342 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5316440 |
atttaggctgtaaaaaaatgtcagcttaaggaaacaatcagc |
5316481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 5287687 - 5287347
Alignment:
| Q |
1 |
tgttggaaggactggtactggaaaaagtacgcttataagtgctttgtttcgcttagttgagccttcaaaaggtgctattctcatagatagaataaacata |
100 |
Q |
| |
|
||||||||||||||| | ||| ||||| || || || ||||||||||||||||||||||||||||||| ||||| |||||| |||||| | | |||||| |
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|
| T |
5287687 |
tgttggaaggactggaagtgggaaaagcacactgattagtgctttgtttcgcttagttgagccttcaagaggtgatattcttatagatggggttaacata |
5287588 |
T |
|
| Q |
101 |
tgctcaatcgggttgcaggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctcgaccctctag |
200 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |
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|
| T |
5287587 |
tgctcaatcggattgaaggatttgagaacaaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattagaacaaacctggaccctctag |
5287488 |
T |
|
| Q |
201 |
gcctgtactcagatgatgaaatatggaaggtgaattgactaactttaaaagaagttgaattttacatgagccattcaataaaataatatttgatttctat |
300 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| || |||||||| | |||||||||||||||||||||||||||||||||| ||||||||| ||| |
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|
| T |
5287487 |
gcctgtattcagatgatgaaatatggaaggtgaattaac-aactttaattgcagttgaattttacatgagccattcaataaaataaaatttgatttgtat |
5287389 |
T |
|
| Q |
301 |
atttaggctgtnnnnnnntgtcagcttaaggaaacaatcagc |
342 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5287388 |
atttaggctgtagaaaaatgtcagcttaaggaaacaatcagc |
5287347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 5279984 - 5279750
Alignment:
| Q |
1 |
tgttggaaggactggtactggaaaaagtacgcttataagtgctttgtttcgcttagttgagccttcaaaaggtgctattctcatagatagaataaacata |
100 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||| || ||| |||| |||||| |
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|
| T |
5279984 |
tgttggaaggactggaagcggaaaaagtacacttataagtgctttgtttcgcttagttgagccttcaaaaggtgatattcttattgatggaattaacata |
5279885 |
T |
|
| Q |
101 |
tgctcaatcgggttgcaggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctcgaccctctag |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||| || |||||||||| |
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|
| T |
5279884 |
tgctcaatcgggttaaaggatttgagaacaaagctaagcatcattccgcaagaaccaacacttttcaaaggcagcattaggacaaatctggaccctctag |
5279785 |
T |
|
| Q |
201 |
gcctgtactcagatgatgaaatatggaaggtgaat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
5279784 |
gcctgtactcagatgatgaaatatggaaggtgaat |
5279750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 15128040 - 15128274
Alignment:
| Q |
1 |
tgttggaaggactggtactggaaaaagtacgcttataagtgctttgtttcgcttagttgagccttcaaaaggtgctattctcatagatagaataaacata |
100 |
Q |
| |
|
|||||||||||| || | |||||||||||| || || ||||||||||||||||||||||||||||||| ||||| |||||| || ||| | |||||||| |
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|
| T |
15128040 |
tgttggaaggaccggaagtggaaaaagtacactgattagtgctttgtttcgcttagttgagccttcaagaggtgatattcttattgatgggataaacatt |
15128139 |
T |
|
| Q |
101 |
tgctcaatcgggttgcaggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctcgaccctctag |
200 |
Q |
| |
|
|||||||| || ||| |||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
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|
| T |
15128140 |
tgctcaatgggattgaaggatttgagaatgaagctaagcataatccctcaagaaccaactcttttcaagggcagcattagaacaaacctggaccctctag |
15128239 |
T |
|
| Q |
201 |
gcctgtactcagatgatgaaatatggaaggtgaat |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
15128240 |
gcctgtactcagatgatgaaatatggaaggtgaat |
15128274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 5309466 - 5309698
Alignment:
| Q |
1 |
tgttggaaggactggtactggaaaaagtacgcttataagtgctttgtttcgcttagttgagccttcaaaaggtgctattctcatagatagaataaacata |
100 |
Q |
| |
|
||||||||||||||| | |||||||||||| || || |||||||||||||||||||||||||| |||| ||||| ||||||||||||| | || |||||| |
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|
| T |
5309466 |
tgttggaaggactggaagtggaaaaagtacactgattagtgctttgtttcgcttagttgagccatcaagaggtgatattctcatagatgggattaacata |
5309565 |
T |
|
| Q |
101 |
tgctcaatcgggttgcaggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctcgaccctctag |
200 |
Q |
| |
|
||||||||||| ||| |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||| | ||||||||| || ||||||| |
|
|
| T |
5309566 |
tgctcaatcggattgagggatttgagaacgaagctaagcatcattccgcaagaaccaacacttttcaagggaagcatcaagacaaacctggatcctctag |
5309665 |
T |
|
| Q |
201 |
gcctgtactcagatgatgaaatatggaaggtga |
233 |
Q |
| |
|
||||| ||||||| |||||||||||||| |||| |
|
|
| T |
5309666 |
gcctgcactcagacgatgaaatatggaaagtga |
5309698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 14946997 - 14946753
Alignment:
| Q |
1 |
tgttggaaggactggtactggaaaaagtacgcttataagtgctttgtttcgcttagttgagccttcaaaaggtgctattctcatagatagaataaacata |
100 |
Q |
| |
|
|||||||||||| || | |||||||||||| || || || |||||||||||||||||||||||||||| |||| |||||| || ||| | |||||||| |
|
|
| T |
14946997 |
tgttggaaggacgggaagtggaaaaagtacactgattagcgctttgtttcgcttagttgagccttcaagcggtgatattcttattgatgggataaacatt |
14946898 |
T |
|
| Q |
101 |
tgctcaatcgggttgcaggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctcgaccctctag |
200 |
Q |
| |
|
|||||||| |||||| |||||||||||| | ||||||||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
14946897 |
tgctcaatggggttgaaggatttgagaatgaggctaagcataatccctcaagaaccaactcttttcaagggcagcattagaacaaacctggaccctctag |
14946798 |
T |
|
| Q |
201 |
gcctgtactcagatgatgaaatatggaaggtgaattgactaactt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||| |||||||| |
|
|
| T |
14946797 |
gcctgtactcagatgatgaaatatggaatgtaaatgaactaactt |
14946753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 342
Target Start/End: Complemental strand, 5279704 - 5279615
Alignment:
| Q |
253 |
agttgaattttacatgagccattcaataaaataatatttgatttctatatttaggctgtnnnnnnntgtcagcttaaggaaacaatcagc |
342 |
Q |
| |
|
||||||||||||||||||| |||||||||| | ||||||||| | | | |||||||||| |||||||||||||||||||||||| |
|
|
| T |
5279704 |
agttgaattttacatgagctattcaataaagttatatttgatgtgtgtgtttaggctgtagagaaatgtcagcttaaggaaacaatcagc |
5279615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 231
Target Start/End: Complemental strand, 5348600 - 5348500
Alignment:
| Q |
131 |
aagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctcgaccctctaggcctgtactcagatgatgaaatatggaagg |
230 |
Q |
| |
|
|||||||| ||||| ||||||||||||| |||||||||||| || |||| || ||| | || || |||| || | |||||||||||| |||||||||| |
|
|
| T |
5348600 |
aagctaagtatcatccctcaagaaccaattcttttcaagggtagtgttagaaccaacttggatccactagaccaattctcagatgatgagatatggaagg |
5348501 |
T |
|
| Q |
231 |
t |
231 |
Q |
| |
|
| |
|
|
| T |
5348500 |
t |
5348500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 151; Significance: 8e-80; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 31524267 - 31524033
Alignment:
| Q |
1 |
tgttggaaggactggtactggaaaaagtacgcttataagtgctttgtttcgcttagttgagccttcaaaaggtgctattctcatagatagaataaacata |
100 |
Q |
| |
|
||||||||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| | ||||| |||| |||||||| | || |||||| |
|
|
| T |
31524267 |
tgttggaaggactggaagtggaaaaagtacacttataagtgctttgtttcgcttagttgagccttcgagaggtgatattatcatagatgggattaacata |
31524168 |
T |
|
| Q |
101 |
tgctcaatcgggttgcaggatttgagaactaagctaagcatcattcctcaagaaccaactcttttcaagggcagcattaggacaaacctcgaccctctag |
200 |
Q |
| |
|
||||| ||||||||| | |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
31524167 |
tgctcgatcgggttgaaagatttgagaatgaagctaagcatcattcctcaagaaccaacacttttcaagggcagcattaggacaaaccttgaccctttag |
31524068 |
T |
|
| Q |
201 |
gcctgtactcagatgatgaaatatggaaggtgaat |
235 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||| |
|
|
| T |
31524067 |
gcctatacacagataatgaaatatggaaggtgaat |
31524033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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