View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_high_27 (Length: 351)
Name: NF14138_high_27
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_high_27 |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 10 - 337
Target Start/End: Original strand, 29047898 - 29048224
Alignment:
| Q |
10 |
gcaaaggtactgaagatactttatgtagcgcgatacatatatattttattaagaagtaaagttttgatacttgatgcatctcatatgatatttggcttgt |
109 |
Q |
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| T |
29047898 |
gcaaaggtactgaacatactttatgtagcgcgatacatatatattttattaagaagtaaagttttgatacttgatgcatctcatatgatatttggcttgt |
29047997 |
T |
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| Q |
110 |
tgaaagttagtatgaaaaagataaatatgttcaacttaactgaattttttaacacttttcttccagaaattttattgttgtttttattctcaagcagatc |
209 |
Q |
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| T |
29047998 |
tgaaagttagtatgaaaaagataaatatgttcaacttaactgaatttttgaacacttttcttccagaaattttattgttgtttttattctcaagcagatc |
29048097 |
T |
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| Q |
210 |
tcagaaagaagaagcacttcattttcgggtaaccaagtccagtgaggttagccaaatagagaaggtacattctcctgaaaagc-acacattatttaacac |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| | |
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| T |
29048098 |
tcagaaagaagaagcacttcattttcgggtaaccaagtccagtgaggttagccaaatagagaaggtacattctcctgaaaagcaacatattattt--tat |
29048195 |
T |
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| Q |
309 |
gttattacagatataatgaagaatgaatg |
337 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
29048196 |
cttattacagatataatgaagaatgaatg |
29048224 |
T |
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