View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_high_3 (Length: 563)
Name: NF14138_high_3
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 138 - 546
Target Start/End: Complemental strand, 45126901 - 45126494
Alignment:
| Q |
138 |
cctcaaccatttgattggtgatgccccaatatatgaaaaaacctatggtgtgcgcagcaaaaagaaccatagataattgtccaagccagatatgatattt |
237 |
Q |
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| T |
45126901 |
cctcaaccatttgattggtgatgccccaatatatgaaaaaacctatggtgtgcgcagcaaaaagaaccatagataattgtccaagccagatatgatattt |
45126802 |
T |
|
| Q |
238 |
gatgcttgactcagatgtgagaccaacaagacgcagaatggaagaccctcttgtaactggaaagaacaaaaatgcccaacatatgtttcctatgtaacct |
337 |
Q |
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| T |
45126801 |
gatgcttgactcagatgtgagtccaacaagacgcagaatggaagaccctcttgtaaccggaaagaacaaaaatgcccaacatatgtttcctatgtaacct |
45126702 |
T |
|
| Q |
338 |
agtctcaaaaatacactcctgaacttcgcttcccatctacaaacaccaataatcatcgatatatagttagtannnnnnnccattcaggttaattaattgt |
437 |
Q |
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| T |
45126701 |
agtctcaaaaatacactcctgaacttcgcttcccatctacaaacaccaataatcatcaatatatagttagtatttttttccattcaggttaattaattgt |
45126602 |
T |
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| Q |
438 |
taacaaagcaatttattttaaccccccaattttcctctaagtgaaatgggttttgtaatctaggattccatcggaaagtaaataaagtttgatcaataat |
537 |
Q |
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| T |
45126601 |
taacaaagcaatttattttaa-cccccaattctcctctaagtgaaatggttttcgtaatctaggattccatcggaaagtaaattaagtttgatcaataat |
45126503 |
T |
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| Q |
538 |
cattttaat |
546 |
Q |
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| T |
45126502 |
cattttaat |
45126494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 138 - 376
Target Start/End: Complemental strand, 45109705 - 45109467
Alignment:
| Q |
138 |
cctcaaccatttgattggtgatgccccaatatatgaaaaaacctatggtgtgcgcagcaaaaagaaccatagataattgtccaagccagatatgatattt |
237 |
Q |
| |
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|||||| |||||| || |||||| ||||||| |||| |||||| |||| || |||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
45109705 |
cctcaatcatttggttagtgatggcccaataaatgataaaaccaatggaatgagcagcaaagagaaccatagataattgtccaagccagatatgatactt |
45109606 |
T |
|
| Q |
238 |
gatgcttgactcagatgtgagaccaacaagacgcagaatggaagaccctcttgtaactggaaagaacaaaaatgcccaacatatgtttcctatgtaacct |
337 |
Q |
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| T |
45109605 |
gatgcttgactcagatgtgagtccaacaagaggcagaatagaagacattcttgtgactggaaagaacaaaaatgccaaacatatgtttcctatgtaagca |
45109506 |
T |
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| Q |
338 |
agtctcaaaaatacactcctgaacttcgcttcccatcta |
376 |
Q |
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||||||||| |||||||||| ||||| |||||||||||| |
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| T |
45109505 |
agtctcaaagatacactcctcaactttgcttcccatcta |
45109467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 45127028 - 45126940
Alignment:
| Q |
15 |
caaagggcctatttataagaaccttaatttctttttcctcgatctatttgcgggtaattaaattaagattgcacattaaaaacacacac |
103 |
Q |
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| T |
45127028 |
caaagggcctatttataagaaccttaatttctttttcctcgatctatttgcgggtaattaaattaagattgcacattaaaaacacacac |
45126940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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