View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_high_30 (Length: 320)
Name: NF14138_high_30
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_high_30 |
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Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 9 - 303
Target Start/End: Original strand, 24390439 - 24390733
Alignment:
| Q |
9 |
gttgctctataactcaactttcggcatctgttaaggttcaaatttcaatcacagaagaaaaaagtacagttctgatgaatatccctcccgctaagtcacg |
108 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24390439 |
gttgctatataactcaactttcggcatctgttaagcttcaaatttcaatcacagaagaaaaaagtacagttctgatgaatatccctcccgctaagtcacg |
24390538 |
T |
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| Q |
109 |
acgtcgatcccttgcgcaactgtcatctccaccggtaattctcccagatgaacttgtttgtgaagtgttatcattccttaccgtgaaacttcttatgcga |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
24390539 |
acgtcgatcccttgcgcaactgtcatctccaccggtaattctcccagatgaacttgtctgtgaagtgttatcattccttaccgtgaaacttcttatgcga |
24390638 |
T |
|
| Q |
209 |
ttcaggtgcgtttgcaagtcatggaatgctctaatcgatagccctagttttatcaaaattcaacaaaagaaatctgagcgaaacaaacaaataat |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
24390639 |
ttcaggtgcgtttgcaagtcatggaatgctctaatcgatagccctaattttatcaaaattcaccaaaagaaatctgagcgaaacaaacaaataat |
24390733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 9 - 303
Target Start/End: Original strand, 24384213 - 24384508
Alignment:
| Q |
9 |
gttgctctataactcaactttcggcatctgttaaggttcaaatttcaatcacagaagaaaaa-agtacagttctgatgaatatccctcccgctaagtcac |
107 |
Q |
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|||||| ||||||||||||||| |||||||||| ||||||| |||||||||||||| ||||| | ||||||||||||||||||||||| |||||| ||| |
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| T |
24384213 |
gttgctatataactcaactttctgcatctgttagggttcaattttcaatcacagaataaaaacaaaacagttctgatgaatatccctccagctaagccac |
24384312 |
T |
|
| Q |
108 |
gacgtcgatcccttgcgcaactgtcatctccaccggtaattctcccagatgaacttgtttgtgaagtgttatcattccttaccgtgaaacttcttatgcg |
207 |
Q |
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| T |
24384313 |
tgcccaagtcccttgcgcaaccatcatctcgacaggtaattctccccgatgatcttatctttgaagtgttatcattccttaccgtgaatcatcttatgcg |
24384412 |
T |
|
| Q |
208 |
attcaggtgcgtttgcaagtcatggaatgctctaatcgatagccctagttttatcaaaattcaacaaaagaaatctgagcgaaacaaacaaataat |
303 |
Q |
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||| ||||||||||||||||| |||||| |||||||| |||||||||||||||||| ||||| | ||| |||||||| ||||||||||||||||| |
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| T |
24384413 |
atttaggtgcgtttgcaagtcgtggaattctctaatctctagccctagttttatcaagattcaccgaaacaaatctgaacgaaacaaacaaataat |
24384508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 169 - 295
Target Start/End: Original strand, 24383312 - 24383438
Alignment:
| Q |
169 |
tgaagtgttatcattccttaccgtgaaacttcttatgcgattcaggtgcgtttgcaagtcatggaatgctctaatcgatagccctagttttatcaaaatt |
268 |
Q |
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|||||| |||| ||||||||||||||| |||||| ||||| ||| ||||||||||||| ||||||||| || || || ||||| ||||| |||||| |
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| T |
24383312 |
tgaagtcttatagttccttaccgtgaaatttcttacacgatttaggcgcgtttgcaagtcttggaatgctttagtctctaaccctaaatttataaaaatt |
24383411 |
T |
|
| Q |
269 |
caacaaaagaaatctgagcgaaacaaa |
295 |
Q |
| |
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|| |||||||||||||| | ||||||| |
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| T |
24383412 |
caccaaaagaaatctgaacaaaacaaa |
24383438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 177 - 297
Target Start/End: Complemental strand, 24956419 - 24956295
Alignment:
| Q |
177 |
tatcattccttaccgtgaaacttcttatgcg----attcaggtgcgtttgcaagtcatggaatgctctaatcgatagccctagttttatcaaaattcaac |
272 |
Q |
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|||| |||||||||||||||| ||||||||| ||||||||| |||||||||| ||||||||||||||| || ||||| ||||| |||||||| | |
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| T |
24956419 |
tatctttccttaccgtgaaacctcttatgcgtgcgattcaggtgtgtttgcaagtattggaatgctctaatctctaaccctaaatttattaaaattcacc |
24956320 |
T |
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| Q |
273 |
aaaagaaatctgagcgaaacaaaca |
297 |
Q |
| |
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|||||||| |||| ||||||||||| |
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| T |
24956319 |
aaaagaaacctgaacgaaacaaaca |
24956295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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