View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_high_39 (Length: 276)
Name: NF14138_high_39
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 168; Significance: 4e-90; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 35 - 261
Target Start/End: Complemental strand, 2685606 - 2685380
Alignment:
| Q |
35 |
aagaatatttcatcttctaaactcaaatgtgaggcctcaagaagctctatgatatctttagcattactagagaatttgttgtccatcacatctaagaagt |
134 |
Q |
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| T |
2685606 |
aagattatttcatcttctaaacccaaatgtgaggcctcaagaagctctataatatctttagcattactagagaatttattgtccatcacatctaagaagt |
2685507 |
T |
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| Q |
135 |
tgcttagtatatctgaatttcatgaataaataacaaccnnnnnnnnnnnnnttagttcctaggttttgataaatttgatgaatatctaattaaaatagat |
234 |
Q |
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| T |
2685506 |
tgcttagtatatctgaatttcatgaataaataacaaccaaaaaaccaaaaattagttcctaggttttgataaatttgatgaatatctaattaaaatagat |
2685407 |
T |
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| Q |
235 |
agttaccagatggaaacacattgtatc |
261 |
Q |
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|||||||||||||||| |||||||||| |
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| T |
2685406 |
agttaccagatggaaaaacattgtatc |
2685380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 42 - 261
Target Start/End: Complemental strand, 2680340 - 2680133
Alignment:
| Q |
42 |
tttcatcttctaaactcaaatgtgaggcctcaagaagctctatgatatctttagcattactagagaatttgttgtccatcacatctaagaagttgcttag |
141 |
Q |
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||||||||||||| | ||||||||||||||||| ||||||||| | || |||||||| |||||||||| ||||||| || |||||||||||||||||||| |
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| T |
2680340 |
tttcatcttctaagcccaaatgtgaggcctcaacaagctctataaaatatttagcatcactagagaatctgttgtctataacatctaagaagttgcttag |
2680241 |
T |
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| Q |
142 |
tatatctgaatttcatgaataaataacaaccnnnnnnnnnnnnnttagttcctaggttttgataaatttgatgaatatctaattaaaatagatagttacc |
241 |
Q |
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||||||||||||||||| ||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
2680240 |
tatatctgaatttcatg----aatgacaac--------gaaaaattagttcctaggttgtgataaatttgatgaatatctaattaaaatagatagttacc |
2680153 |
T |
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| Q |
242 |
agatggaaacacattgtatc |
261 |
Q |
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||||||||| |||||||||| |
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| T |
2680152 |
agatggaaaaacattgtatc |
2680133 |
T |
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