View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14138_high_44 (Length: 252)

Name: NF14138_high_44
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14138_high_44
NF14138_high_44
[»] chr7 (2 HSPs)
chr7 (129-248)||(2686115-2686234)
chr7 (8-124)||(2686284-2686409)
[»] chr8 (3 HSPs)
chr8 (35-118)||(18637632-18637715)
chr8 (71-117)||(42579893-42579939)
chr8 (39-124)||(36024135-36024220)
[»] chr1 (5 HSPs)
chr1 (11-120)||(6689090-6689208)
chr1 (34-124)||(17823740-17823830)
chr1 (143-206)||(6689276-6689339)
chr1 (35-121)||(43468354-43468440)
chr1 (87-123)||(38069493-38069529)
[»] chr4 (4 HSPs)
chr4 (35-115)||(56337948-56338028)
chr4 (39-124)||(18734167-18734252)
chr4 (39-124)||(41381587-41381672)
chr4 (39-124)||(15342444-15342529)
[»] chr2 (4 HSPs)
chr2 (35-110)||(6849212-6849287)
chr2 (75-118)||(11579987-11580030)
chr2 (56-115)||(32617596-32617655)
chr2 (56-121)||(28917205-28917270)
[»] chr3 (3 HSPs)
chr3 (36-124)||(46189126-46189214)
chr3 (73-118)||(34434265-34434310)
chr3 (87-123)||(2427722-2427758)


Alignment Details
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 129 - 248
Target Start/End: Complemental strand, 2686234 - 2686115
Alignment:
Q  129 ttccataaaatccacacacacaatagccaaagtagctgcatgaaggatcgtcgggtcctcagtattcctaaagcgttaatatatatttatccccatgtaa 228  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2686234 ttccataaaatccacacacacaatagccaaagtagctacatgaaggatcgtcgggtcctcagtgttcctaaagcgttaatatatatttatccccatgtaa 2686135  T
Q  229 tattatcggtttctggttta 248  Q
    ||||||||||||||||||||    
T  2686134 tattatcggtttctggttta 2686115  T

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Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 8 - 124
Target Start/End: Complemental strand, 2686409 - 2686284
Alignment:
Q  8 aagcataggtcagtcgatacccagaca---------gtccgaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaag 98  Q
    |||||||||||||||||||||||||||         |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||     
T  2686409 aagcataggtcagtcgatacccagacactgtaacgggtccgaccgccatctttgagtaccaaatacaaaagtggcattattagcctttagccaccacaaa 2686310  T
Q  99 gaattaaatttaaccttttccaacaa 124  Q
    ||||| ||||||||||||||||||||    
T  2686309 gaattcaatttaaccttttccaacaa 2686284  T

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Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 35 - 118
Target Start/End: Complemental strand, 18637715 - 18637632
Alignment:
Q  35 gtccgaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaaccttttc 118  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||    
T  18637715 gtccgaccaccttctttaagtaccaaaaacaaaagcggcattattagcctttagccacctcaaagaattaaatttaacattttc 18637632  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 117
Target Start/End: Complemental strand, 42579939 - 42579893
Alignment:
Q  71 ggcattattagcctttagccaccacaaggaattaaatttaacctttt 117  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||    
T  42579939 ggcattattagcctttagccaccacaaggaatcaaatttaacctttt 42579893  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 36024135 - 36024220
Alignment:
Q  39 gaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaaccttttccaacaa 124  Q
    |||||||| ||||||||||| ||| ||||||     ||||| || |||||||||||||| |||||||| |||||||||||||||||    
T  36024135 gaccaccacctttgagtacctaatgcaaaagaaatgttattggcttttagccaccacaacgaattaaacttaaccttttccaacaa 36024220  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 6689090 - 6689208
Alignment:
Q  11 cataggtcagtcgatacccagaca---------gtccgaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaa 101  Q
    ||||||||||||||||||||||||         ||||||||| ||||||||||||| ||| | ||||| ||| |||||| | |||||||||||||| |||    
T  6689090 cataggtcagtcgatacccagacacggtaacgggtccgaccaacatctttgagtacaaaaaataaaagtggcgttattaacttttagccaccacaaagaa 6689189  T
Q  102 ttaaatttaaccttttcca 120  Q
    |||||||||||||||||||    
T  6689190 ttaaatttaaccttttcca 6689208  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 124
Target Start/End: Original strand, 17823740 - 17823830
Alignment:
Q  34 agtccgaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaaccttttccaacaa 124  Q
    ||||| ||||||||||||||||||| || ||||||| | |||||||| | |||||||||||||| ||||| |||||||| |||| ||||||    
T  17823740 agtccaaccaccatctttgagtacctaaaacaaaagtgacattattaacttttagccaccacaaagaattgaatttaacatttttcaacaa 17823830  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 206
Target Start/End: Original strand, 6689276 - 6689339
Alignment:
Q  143 cacacacaatagccaaagtagctgcatgaaggatcgtcgggtcctcagtattcctaaagcgtta 206  Q
    |||||||||||||||||  ||||||||||| |||| ||||||||||  | ||||||||||||||    
T  6689276 cacacacaatagccaaaagagctgcatgaaagatcttcgggtcctcgatgttcctaaagcgtta 6689339  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 35 - 121
Target Start/End: Complemental strand, 43468440 - 43468354
Alignment:
Q  35 gtccgaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaaccttttccaa 121  Q
    ||||||||| ||| ||| | ||||||| ||||||  | |||||||||| || ||||||||||  |||||||||||||| ||||||||    
T  43468440 gtccgaccatcatttttaaataccaaaaacaaaaatgacattattagctttaagccaccacatagaattaaatttaacattttccaa 43468354  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Original strand, 38069493 - 38069529
Alignment:
Q  87 agccaccacaaggaattaaatttaaccttttccaaca 123  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  38069493 agccaccacaacgaattaaacttaaccttttccaaca 38069529  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 56338028 - 56337948
Alignment:
Q  35 gtccgaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaacctt 115  Q
    |||| ||||||||||||||| |||| | ||||||| |||||| ||||| |||||||||||||| ||| || ||||||||||    
T  56338028 gtccaaccaccatctttgagaaccataaacaaaagtggcattgttagcttttagccaccacaaagaagtatatttaacctt 56337948  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 18734167 - 18734252
Alignment:
Q  39 gaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaaccttttccaacaa 124  Q
    |||||||| ||||||||||| ||| ||||||     ||||| || |||||||||||||| |||||||| |||||||||||||||||    
T  18734167 gaccaccacctttgagtacctaatgcaaaagaaatgttattggcttttagccaccacaacgaattaaacttaaccttttccaacaa 18734252  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 41381587 - 41381672
Alignment:
Q  39 gaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaaccttttccaacaa 124  Q
    |||||||| ||||||||||| ||| ||||||     ||||| || |||||||||||||| |||||||| |||||||||||||||||    
T  41381587 gaccaccacctttgagtacctaatgcaaaagaaatgttattggcttttagccaccacaacgaattaaacttaaccttttccaacaa 41381672  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 39 - 124
Target Start/End: Original strand, 15342444 - 15342529
Alignment:
Q  39 gaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaaccttttccaacaa 124  Q
    |||||||| ||||||| ||| || ||||||||  | ||||| || || |||||||||||  ||||||| || ||||||||||||||    
T  15342444 gaccaccacctttgagaacctaaaacaaaagcaacgttattggctttaagccaccacaacaaattaaacttgaccttttccaacaa 15342529  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 35 - 110
Target Start/End: Original strand, 6849212 - 6849287
Alignment:
Q  35 gtccgaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaattta 110  Q
    ||||||||||||| | ||||||||||| ||||||| ||||||||| || |||||||| || || ||||||||||||    
T  6849212 gtccgaccaccatttctgagtaccaaaaacaaaagtggcattatttgcttttagccaacataaagaattaaattta 6849287  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 75 - 118
Target Start/End: Complemental strand, 11580030 - 11579987
Alignment:
Q  75 ttattagcctttagccaccacaaggaattaaatttaaccttttc 118  Q
    ||||||||||||||||||||||| |||| |||||||||||||||    
T  11580030 ttattagcctttagccaccacaaagaatgaaatttaaccttttc 11579987  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 32617596 - 32617655
Alignment:
Q  56 accaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaacctt 115  Q
    |||||| ||||||||||||||||||||||  | ||||||  |||||| ||||||||||||    
T  32617596 accaaaaacaaaagcggcattattagcctgcaaccaccagtaggaatgaaatttaacctt 32617655  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 121
Target Start/End: Complemental strand, 28917270 - 28917205
Alignment:
Q  56 accaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaaccttttccaa 121  Q
    |||||| ||||||| |||||||||| |||| | ||||||  |||||| |||||||||||| |||||    
T  28917270 accaaaaacaaaagaggcattattaaccttcaaccaccaataggaatgaaatttaaccttctccaa 28917205  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 124
Target Start/End: Original strand, 46189126 - 46189214
Alignment:
Q  36 tccgaccaccatctttgagtaccaaatacaaaagcggcattattagcctttagccaccacaaggaattaaatttaaccttttccaacaa 124  Q
    ||||||||||||||||||| |||| | ||||||  | |||| ||| | |||||||||||||| ||  || |||||||||| ||||||||    
T  46189126 tccgaccaccatctttgagaaccataaacaaaattgacattgttaacttttagccaccacaaagatgtatatttaaccttatccaacaa 46189214  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 34434310 - 34434265
Alignment:
Q  73 cattattagcctttagccaccacaaggaattaaatttaaccttttc 118  Q
    ||||||||||||| ||||||||||| |||| | |||||||||||||    
T  34434310 cattattagccttaagccaccacaacgaatgatatttaaccttttc 34434265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 2427758 - 2427722
Alignment:
Q  87 agccaccacaaggaattaaatttaaccttttccaaca 123  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  2427758 agccaccacaatgaattaaacttaaccttttccaaca 2427722  T

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