View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_high_6 (Length: 511)
Name: NF14138_high_6
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Original strand, 28276006 - 28276508
Alignment:
| Q |
18 |
gcaaatacatttttacttttgtacatatgaatgtgacaaattaagcttgggaatgtagactatgctttgttaggcggaatgtgcattgcatttatttgtg |
117 |
Q |
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| T |
28276006 |
gcaaatacatttttacttttgtacatatgaatgtgacaaattaagcttgggaatgtagactatgctttgttaggcggaatgtgcattgcatttatttgtg |
28276105 |
T |
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| Q |
118 |
aaatcaaatgttatgtttatgttatgccatgtaatactccatatgtgtcgtattcttttacttatgtt----gtttttagatcat--------------- |
198 |
Q |
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| T |
28276106 |
aaatgaaatgttatgtttatgttatgccatgtaatactccatatgtgtcgtattcttttacttatgttaattgtttttagatcatgactcgctacgtact |
28276205 |
T |
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| Q |
199 |
--acctgtggatatatgggctttgctctctggcaatggcagaccatatgcttcaactattacaattttaaaggatactaaatatatcaatgttggcgatg |
296 |
Q |
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| T |
28276206 |
ttacctgtggatatatgggctttgccctctggcaatggcagaccatatgcttcaactgttacaattttaaaggatactaaatatatcaatgttgacgatg |
28276305 |
T |
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| Q |
297 |
taggacatgtagatcaatctataggagaggttgctgaagataatatatggtagttatttttcaggatgacaattatgtagccaaagtcaccacctctgtt |
396 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28276306 |
taggacatgtagatcaatctataggagaggttgctgaagataatatatggtagttatttttcaggatgacaattatgtagccaaagtcaccacctctgtt |
28276405 |
T |
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| Q |
397 |
gattgacttggttagaggtacatactacatagggttattggcttacctgtttatattcgttatgacgtagcttatcttttttggggtcatgtattttgga |
496 |
Q |
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| T |
28276406 |
gattgacttggttagaggtaca---tacatagggttattggcttacctgtttatattcgttatgacgtagcttatc-tttttggggtcatgtattttgga |
28276501 |
T |
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| Q |
497 |
tattttt |
503 |
Q |
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| T |
28276502 |
tattttt |
28276508 |
T |
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