View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14138_high_61 (Length: 232)

Name: NF14138_high_61
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14138_high_61
NF14138_high_61
[»] scaffold0596 (1 HSPs)
scaffold0596 (15-186)||(1207-1378)
[»] chr3 (3 HSPs)
chr3 (50-186)||(37982961-37983097)
chr3 (50-186)||(53972718-53972854)
chr3 (51-186)||(19881544-19881679)
[»] chr5 (4 HSPs)
chr5 (55-186)||(30441983-30442114)
chr5 (55-186)||(7472922-7473053)
chr5 (55-186)||(9044355-9044486)
chr5 (89-171)||(40163917-40163996)
[»] chr2 (4 HSPs)
chr2 (51-186)||(23348413-23348548)
chr2 (15-183)||(10328422-10328590)
chr2 (55-186)||(12742241-12742372)
chr2 (55-186)||(18354744-18354875)
[»] chr7 (1 HSPs)
chr7 (55-186)||(43070819-43070950)


Alignment Details
Target: scaffold0596 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 15 - 186
Target Start/End: Complemental strand, 1378 - 1207
Alignment:
Q  15 catcaatgggcatattggtgtgtttgnnnnnnnnntacacatgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctattt 114  Q
    ||||||||| ||||||||||||||||         ||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||||||    
T  1378 catcaatggacatattggtgtgtttgaaaaaaaaatacacatgattttaaaatatcaatcaatttattaacagcataatacatgatggtaaaatctattt 1279  T
Q  115 aaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1278 aaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttacagga 1207  T

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Target: chr3 (Bit Score: 129; Significance: 7e-67; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 50 - 186
Target Start/End: Complemental strand, 37983097 - 37982961
Alignment:
Q  50 tacacatgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 149  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37983097 tacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 37982998  T
Q  150 tgtaatggaataacaaagttagggaaaagttacagga 186  Q
    |||||||||||||||||||||||||||||||||||||    
T  37982997 tgtaatggaataacaaagttagggaaaagttacagga 37982961  T

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Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 53972718 - 53972854
Alignment:
Q  50 tacacatgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 149  Q
    ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53972718 tacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaa 53972817  T
Q  150 tgtaatggaataacaaagttagggaaaagttacagga 186  Q
    |||||||||||||||||||||||||||||||||||||    
T  53972818 tgtaatggaataacaaagttagggaaaagttacagga 53972854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 19881544 - 19881679
Alignment:
Q  51 acacatgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 150  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19881544 acacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 19881643  T
Q  151 gtaatggaataacaaagttagggaaaagttacagga 186  Q
    ||||||||||||||||||||||||||||||||||||    
T  19881644 gtaatggaataacaaagttagggaaaagttacagga 19881679  T

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Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 55 - 186
Target Start/End: Original strand, 30441983 - 30442114
Alignment:
Q  55 atgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 154  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30441983 atgattttaaagtatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 30442082  T
Q  155 tggaataacaaagttagggaaaagttacagga 186  Q
    ||||||||||||||||||||||||||||||||    
T  30442083 tggaataacaaagttagggaaaagttacagga 30442114  T

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Target: chr5; HSP #2
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 55 - 186
Target Start/End: Original strand, 7472922 - 7473053
Alignment:
Q  55 atgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 154  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7472922 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 7473021  T
Q  155 tggaataacaaagttagggaaaagttacagga 186  Q
    ||||||||||||||||||||||||||||||||    
T  7473022 tggaataacaaagttagggaaaagttacagga 7473053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 55 - 186
Target Start/End: Complemental strand, 9044486 - 9044355
Alignment:
Q  55 atgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 154  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9044486 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 9044387  T
Q  155 tggaataacaaagttagggaaaagttacagga 186  Q
    ||||||||||||||||||||||||||||||||    
T  9044386 tggaataacaaagttagggaaaagttacagga 9044355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 40163996 - 40163917
Alignment:
Q  89 ataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttag 171  Q
    ||||||||| || ||||||||||| |||||||||   |||||| | ||||||||| ||| || ||||||||||||||||||||    
T  40163996 ataatacataattgtaaaatctatgtaaatatca---attcacatccaaacaaactaaatatataatggaataacaaagttag 40163917  T

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Target: chr2 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 51 - 186
Target Start/End: Original strand, 23348413 - 23348548
Alignment:
Q  51 acacatgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 150  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23348413 acacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaat 23348512  T
Q  151 gtaatggaataacaaagttagggaaaagttacagga 186  Q
    ||||||||||||||||||||||||||||||||||||    
T  23348513 gtaatggaataacaaagttagggaaaagttacagga 23348548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 15 - 183
Target Start/End: Original strand, 10328422 - 10328590
Alignment:
Q  15 catcaatgggcatattggtgtgtttgnnnnnnnnntacacatgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctattt 114  Q
    ||||||||| ||||||||||||||||         ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||    
T  10328422 catcaatggacatattggtgtgtttgaaaaaaaaatacacatgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctattt 10328521  T
Q  115 aaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagttaca 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10328522 aaatatcatcaattcacttacaaacaaaccaaaaatgtaatggaataacaaagttagggaaaagataca 10328590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 55 - 186
Target Start/End: Complemental strand, 12742372 - 12742241
Alignment:
Q  55 atgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 154  Q
    |||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12742372 atgattttaaagtatcaatcaatttattaacagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 12742273  T
Q  155 tggaataacaaagttagggaaaagttacagga 186  Q
    ||||||||||||||||||||||||||||||||    
T  12742272 tggaataacaaagttagggaaaagttacagga 12742241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 55 - 186
Target Start/End: Original strand, 18354744 - 18354875
Alignment:
Q  55 atgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 154  Q
    |||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18354744 atgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 18354843  T
Q  155 tggaataacaaagttagggaaaagttacagga 186  Q
    |||||||||||||||||||||||| |||||||    
T  18354844 tggaataacaaagttagggaaaagctacagga 18354875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 55 - 186
Target Start/End: Original strand, 43070819 - 43070950
Alignment:
Q  55 atgattttaaagcatcaatcaatttattaacaacataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 154  Q
    |||||||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43070819 atgattttaaagtatcaatcaatttattaagagcataatacatgatggtaaaatctatttaaatatcatcaattcacttacaaacaaaccaaaaatgtaa 43070918  T
Q  155 tggaataacaaagttagggaaaagttacagga 186  Q
    ||||||||||||||||||||||||||||||||    
T  43070919 tggaataacaaagttagggaaaagttacagga 43070950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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