View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_low_1 (Length: 693)
Name: NF14138_low_1
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 213 - 684
Target Start/End: Complemental strand, 3340083 - 3339612
Alignment:
| Q |
213 |
cttgatcaaataaatgaaatcaacatagttgttaattgatttttgagtgaatcaccaaatttattctttgcaattgtaggaaattgttaacttgttttta |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3340083 |
cttgatcaaataaatgaaatcaacatagttgttaattgatttttgagtgaatcaccaaatttattctttgcaattgtaggaaattgttaacttgttttta |
3339984 |
T |
|
| Q |
313 |
aactatgtttcaaattctcttttaattttaaaattctcgtcacataaatctttgtcaaataatttcattgactaaattgatttgatcccttcgaaattat |
412 |
Q |
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|||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
3339983 |
aactatgtttaaaattctcttttaattttaaaattctcatcacataaatctttgtcaaatagtttcattgaataaattgatttgatcccttcgaaattat |
3339884 |
T |
|
| Q |
413 |
acgacaaaattaatttgattcaaaagacattccaaatattaacaattttaaataggcttaaa-gcgaattttggtttaccttcattttgtattcatgagn |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3339883 |
acgacaaaattaatttgattcaaaagacattccaaatattaacaattttaaataggcttaaaggcgaattttggtttaccttcattttgtattcatgaga |
3339784 |
T |
|
| Q |
512 |
nnnnnngacatattagtttggtaataaaatgaatctcataaagctatcagatgtgtatatctctctcgtagacaataaatagagtacggataataatact |
611 |
Q |
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|||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||| ||| | |
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| T |
3339783 |
aaaaaagacata-tagtttggtgataaaatgaatctcataaagctatcacatgtgtatatctctctcgtagacaataaatagagtaaggttaatgatagt |
3339685 |
T |
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| Q |
612 |
tgacacgtcaaaataagtgcatgactcatagcacgacatatttaaaaccgttggatgattgtttgatgtttta |
684 |
Q |
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| T |
3339684 |
tgacacgacaaaataagtgcatgactcatagcacgacatatttaaaaccgttggatgattgtttgttgtttta |
3339612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 16 - 188
Target Start/End: Complemental strand, 3340275 - 3340103
Alignment:
| Q |
16 |
tatatttacctctattccatgagaagttattaaatttaagtcctttgccatcagtgtccactaaaaatgggccaatctcttgtgttgctccatatccaac |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3340275 |
tatatttacctctattccatgagaagttattaaatttaagtcctttgccatcagtgtccactaaaaatgggccaatctcttgtgttgctccatatccaac |
3340176 |
T |
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| Q |
116 |
agatgagcatccaggacctgtaacaaaaaagcacattgttaccttattagtagagaacgtatatcggagaaat |
188 |
Q |
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| T |
3340175 |
agatgagcatccaggacctgtaacaaaaaagcacattgttaccttattagtagagaacgtatatcagagaaat |
3340103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 30 - 138
Target Start/End: Complemental strand, 3332683 - 3332575
Alignment:
| Q |
30 |
ttccatgagaagttattaaatttaagtcctttgccatcagtgtccactaaaaatgggccaatctcttgtgttgctccatatccaacagatgagcatccag |
129 |
Q |
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|||||||||||||| |||||||| || || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3332683 |
ttccatgagaagttgttaaatttgagacccttgccatcagtgtccactaaaaatggaccaatctcttgtgttgctccatatccaacagatgagcatccag |
3332584 |
T |
|
| Q |
130 |
gacctgtaa |
138 |
Q |
| |
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||||||||| |
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| T |
3332583 |
gacctgtaa |
3332575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 141
Target Start/End: Original strand, 35794907 - 35795038
Alignment:
| Q |
16 |
tatatttacctctattccatgagaagttattaaatttaagtcctttgccatcagtgt------ccactaaaaatgggccaatctcttgtgttgctccata |
109 |
Q |
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||||| ||||| | |||||||||||||||||||||||||| |||| |||||| | | ||||||||||||| ||||||||||||||||||||||| |
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| T |
35794907 |
tatatatacctttgttccatgagaagttattaaatttaaggccttgtccatcattattattatccactaaaaatggaccaatctcttgtgttgctccata |
35795006 |
T |
|
| Q |
110 |
tccaacagatgagcatccaggacctgtaacaa |
141 |
Q |
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||| ||||| ||||| |||||||||| ||||| |
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| T |
35795007 |
tcccacagaggagcacccaggacctgcaacaa |
35795038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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