View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_low_10 (Length: 489)
Name: NF14138_low_10
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 42 - 337
Target Start/End: Complemental strand, 6924972 - 6924676
Alignment:
| Q |
42 |
gcaataatttaaggttagagagtacaaaatttatggtccaatttacaaattctgtactttacccctacaattggtataccccgaaaatggatagggatct |
141 |
Q |
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| T |
6924972 |
gcaataatttaaggttagagagtacaaaatttaaggtccaatttacaaattctgtactttacccctataattggtataccccgaaaatggatagggatct |
6924873 |
T |
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| Q |
142 |
acacatttgtaatgttggnnnnnnn-agctatttgaatgaatgaaatatcttctataacaaaaatataaaaagagtctagcttcatgaaaaatattgatt |
240 |
Q |
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| T |
6924872 |
acacatttgtaatgttgtttttttttagctatttgaatgaatgaaatatcttctataacaaaaatataaaaagagtctagcttcatgaaaaatattgatt |
6924773 |
T |
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| Q |
241 |
tgagtatgacctttgacgtgttagaggccaattttaaagctttacctacttaaaacttacgttactatttattttagatgacatatcttattaaaat |
337 |
Q |
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| T |
6924772 |
tgagtatgacctttgacgtgttagaggccaattttaaagctttacctacttaaaacttacgttactatttattttagatgacacatcttattaaaat |
6924676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 329 - 478
Target Start/End: Complemental strand, 6923462 - 6923310
Alignment:
| Q |
329 |
tattaaaattctattttttaatagaatgttgattaaatatgtcaaatatagatgtaggttagtatgattaaatcggataaaatgttaacagatttatgat |
428 |
Q |
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| T |
6923462 |
tattaaaattctattttataatagaatgttgattaaatatgtcaaatatagatgtaggttagtatgattaaatcggataaaatgttaacagatttatgat |
6923363 |
T |
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| Q |
429 |
ttaacacaaattacaaaatttaatataataa---taattatatttacattcat |
478 |
Q |
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| T |
6923362 |
ttaacacaaattacaaaatttaatataataataataattatatttacattcat |
6923310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 407 - 462
Target Start/End: Original strand, 18988910 - 18988965
Alignment:
| Q |
407 |
aaaatgttaacagatttatgatttaacacaaattacaaaatttaatataataataa |
462 |
Q |
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| T |
18988910 |
aaaatgttaacaaatttataaattaattcaaattacaaaatataatataataataa |
18988965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 461
Target Start/End: Complemental strand, 817745 - 817696
Alignment:
| Q |
412 |
gttaacagatttatgatttaacacaaattacaaaatttaatataataata |
461 |
Q |
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| T |
817745 |
gttaacaaatttatgatttaattcaaagtacaaaatataatataataata |
817696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 407 - 461
Target Start/End: Original strand, 38303895 - 38303949
Alignment:
| Q |
407 |
aaaatgttaacagatttatgatttaacacaaattacaaaatttaatataataata |
461 |
Q |
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|||| ||||||| |||||| |||| | ||||||||||||||||||||||||||| |
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| T |
38303895 |
aaaaagttaacaaatttataattttatccaaattacaaaatttaatataataata |
38303949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 420 - 457
Target Start/End: Original strand, 47044504 - 47044541
Alignment:
| Q |
420 |
atttatgatttaacacaaattacaaaatttaatataat |
457 |
Q |
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| T |
47044504 |
atttatgatttaacacaaattacaaaatctactataat |
47044541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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