View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_low_12 (Length: 484)
Name: NF14138_low_12
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 195 - 480
Target Start/End: Complemental strand, 43051913 - 43051628
Alignment:
| Q |
195 |
aacaactcgaaaatattgacaacatgagacttaaatacaacctcaataatatgaatactagaaatttgtgtgcgaaattgaataatttaccttcttccca |
294 |
Q |
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| T |
43051913 |
aacaactcgaaaatattggcaacatgagacttaaatacaacctcaataatatgaatactagaaatttgtgtgcgaaattgaataatttaccttcttccca |
43051814 |
T |
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| Q |
295 |
cggatgacagcaccagactctccttggatgaccatgtatttgactcctgcaaggtgcaagcccgtaggagcaagatgaccaggttcgtcaaaatctttca |
394 |
Q |
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| T |
43051813 |
cggatgacagcaccagactctccttggatgaccatgtatttgactcctgcaaggtgcaagcccgtaggagcaagatgaccaggttcgtcaaaatctttca |
43051714 |
T |
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| Q |
395 |
taatatcagtgttctcttgaggcttaatctgaaaaataatcataaataaaaattgattagagcaatttcacttgatcataatagta |
480 |
Q |
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| T |
43051713 |
taatatcagtgttctcttgaggcttaatctgaaaaataatcataaataaaaattgattagagcaatttcacttgatcataatagta |
43051628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 43052064 - 43051903
Alignment:
| Q |
16 |
caaaaactagagcttgaccggttttctttatggtgatgcctccagatccctatcaaaataacaatcacacatatcatttttgtctttaatacacaacgtg |
115 |
Q |
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| T |
43052064 |
caaaaactagagcttgaccggttttctttatggtgatgcctccagatccctatcaaaataacaatcacacatatcatttttgtctttaatacacaacgtg |
43051965 |
T |
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| Q |
116 |
tacttaacacggttttgataccatgttaaatggacttgaatatcattctgaaacaactcgaa |
177 |
Q |
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| T |
43051964 |
tacttaacacggttttgataccatgttaaatggtcttgaatatcattctgaaacaactcgaa |
43051903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 281 - 430
Target Start/End: Original strand, 34173060 - 34173209
Alignment:
| Q |
281 |
ttaccttcttcccacggatgacagcaccagactctccttggatgaccatgtatttgactcctgcaaggtgcaagcccgtaggagcaagatgaccaggttc |
380 |
Q |
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|||||||||||||||| |||||||| |||| ||||||||| || |||||||| |||| | | ||||||||| ||| ||||| |||||||| || ||||| |
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| T |
34173060 |
ttaccttcttcccacgaatgacagctccaggctctccttgaataaccatgtacttgatttccccaaggtgcatgccagtaggtgcaagatgtcctggttc |
34173159 |
T |
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| Q |
381 |
gtcaaaatctttcataatatcagtgttctcttgaggcttaatctgaaaaa |
430 |
Q |
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| T |
34173160 |
gtcgaaatctttcatgataccagtaatctcatcaggcttaaactgtaaaa |
34173209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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