View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_low_13 (Length: 474)
Name: NF14138_low_13
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 5680682 - 5680358
Alignment:
| Q |
1 |
attgtaacacgaaattgcgaagtttgaaacc-gttggagaaataaaattatctaattttacgttacctgaaagattattagcttcattaggtgtaagtaa |
99 |
Q |
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| T |
5680682 |
attgtaacacgaaattgcgaagtttgaaacccgttggagaaataaaattatctaattttacgttacctgaaagattattggcttcattaggtgtaagtaa |
5680583 |
T |
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| Q |
100 |
tgctgcaaagccattgaaagtgtgtttgtaactgtaaagatgggaagctcgagcttcatcctcagtttctttcaccaaaagcaaataagagtgatgtgta |
199 |
Q |
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| T |
5680582 |
tgctgcaaagccattgaaagtgtgtttgtaactgtaaagatgggaagctcgagcttcatcctcagtttctttcaccaaaagcaaataagagtgatgtgta |
5680483 |
T |
|
| Q |
200 |
ttctctatttcatgcagttttttatctccattaatattgtgctctccaagttcaactagataaacctgtgagaaaatttcatcaaaagatgtttcacttg |
299 |
Q |
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| T |
5680482 |
ttctctatttcatgcagtgttttatctcctttaatattgttctctccaagttcaactagataaacctgtgagaaaatttcatcaaaagatgtttcacttg |
5680383 |
T |
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| Q |
300 |
agactaagagttacaaataagagca |
324 |
Q |
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| T |
5680382 |
agactaagagttacaaataagagca |
5680358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 62 - 276
Target Start/End: Complemental strand, 5689930 - 5689719
Alignment:
| Q |
62 |
ttacctgaaagattattagcttcattaggtgtaagtaatgctgcaaagccattgaaagtgtgtttgtaactgtaaagatgggaagctcgagcttcatcct |
161 |
Q |
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| T |
5689930 |
ttacctgagagattattggcttcatttggtgtaagtaatgctgcaaaaccattgaaagtgtgtttataactataaagaagggaaaccctagcttcctcct |
5689831 |
T |
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| Q |
162 |
cagtttctttcaccaaaagcaaataagagtgatgtgtattctctatttcatgcagttttttatctccattaatattgtgctctccaagttcaactagata |
261 |
Q |
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| T |
5689830 |
cagtttcttttaccaaaagcaaataagagtgatgtgtattctctatttcatgcagtgttttatgtccat---tattgtgctctccaaattccactagata |
5689734 |
T |
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| Q |
262 |
aacctgtgagaaaat |
276 |
Q |
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| T |
5689733 |
aacctgtgagaaaat |
5689719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 390 - 467
Target Start/End: Complemental strand, 5680292 - 5680215
Alignment:
| Q |
390 |
cctgattattattggtgcatgacaccaatggaagaaggaggaggaggaggaagagacatgttgtggaaatgatgatgt |
467 |
Q |
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| T |
5680292 |
cctgattattattggtgcatgacaccaatggaagaaggagcaggaggaggaagagacatgttgtggaaatgatgatgt |
5680215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 390 - 434
Target Start/End: Complemental strand, 5689642 - 5689598
Alignment:
| Q |
390 |
cctgattattattggtgcatgacaccaatggaagaaggaggagga |
434 |
Q |
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| T |
5689642 |
cctgattatttttggtgcatgagaccaatggaagaaggagaagga |
5689598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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