View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14138_low_15 (Length: 436)

Name: NF14138_low_15
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14138_low_15
NF14138_low_15
[»] chr1 (5 HSPs)
chr1 (12-359)||(38321297-38321646)
chr1 (361-421)||(38321943-38322003)
chr1 (374-423)||(42747729-42747778)
chr1 (374-421)||(21516491-21516538)
chr1 (382-421)||(32348443-32348482)
[»] chr2 (2 HSPs)
chr2 (374-421)||(15804509-15804556)
chr2 (374-421)||(42034572-42034618)
[»] scaffold0040 (1 HSPs)
scaffold0040 (376-421)||(49753-49798)
[»] chr3 (5 HSPs)
chr3 (376-421)||(32325994-32326039)
chr3 (382-421)||(32582631-32582670)
chr3 (363-421)||(9198019-9198077)
chr3 (376-421)||(35696648-35696693)
chr3 (367-419)||(35682680-35682732)
[»] chr8 (4 HSPs)
chr8 (365-421)||(25019471-25019527)
chr8 (383-421)||(29861520-29861558)
chr8 (376-421)||(35764762-35764807)
chr8 (381-421)||(33583891-33583931)
[»] chr5 (3 HSPs)
chr5 (363-419)||(17902827-17902883)
chr5 (374-421)||(2942106-2942153)
chr5 (370-419)||(19397595-19397644)
[»] chr4 (3 HSPs)
chr4 (388-421)||(27611816-27611849)
chr4 (376-421)||(30070331-30070376)
chr4 (381-421)||(52327473-52327513)
[»] chr7 (2 HSPs)
chr7 (395-423)||(25129806-25129834)
chr7 (381-421)||(29234852-29234892)


Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 12 - 359
Target Start/End: Original strand, 38321297 - 38321646
Alignment:
Q  12 tactgtggagagagatgggtttctttgggaagaaggtcctaatagttttcaaccttctgatcctatgctcaccatggtggtatgtttgtaatcaatgtta 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38321297 tactgtggagagagatgggtttctttgggaagaaggtcctaatagttttcaaccttctgatcctatgctcaccatggtggtatgtttgtaatcaatgtta 38321396  T
Q  112 tttcctctttagagcttcattcgtaatgtggtgcatgcaattggttgaaattgaaattttgtttgagtaaatagttattttgcttttgaatgtcttagtt 211  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  38321397 tttcctctttagagcttcattcgtaacgtggtgcatgcaattggttgaaattgaaattttgattgagtaaatagttattttgcttttgaatgtcttagtt 38321496  T
Q  212 ttgccattacagtctctagatgtcttagtttgagtnnnnnnngcattaaatatgtca--nnnnnnnnagtaaatttggtccttgaatgtgtatttaggtt 309  Q
    ||| |||||||||||||||||||||||||||||||       |||||||||||||||          |||||||||||||||||||||||||||||||||    
T  38321497 ttgtcattacagtctctagatgtcttagtttgagtaaaaaaagcattaaatatgtcattttttttttagtaaatttggtccttgaatgtgtatttaggtt 38321596  T
Q  310 ctgtcttgtaaaaaattgcggataattgataaattagcggctagcggata 359  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38321597 ctgtcttgtaaaaaattgcggataattgataaattagcggctagcggata 38321646  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 361 - 421
Target Start/End: Original strand, 38321943 - 38322003
Alignment:
Q  361 tagataagctaattgatagtggataaactagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38321943 tagataagctaactgatagtggataaactagttgtttgaatttgtagtgtttggtaaaatt 38322003  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 374 - 423
Target Start/End: Complemental strand, 42747778 - 42747729
Alignment:
Q  374 tgatagtggataaactagttgtttgaatttgtagtgtttggtaaaatttg 423  Q
    |||||| |||||| ||||||  ||||||||||||||||||||||||||||    
T  42747778 tgatagaggataagctagttaattgaatttgtagtgtttggtaaaatttg 42747729  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Original strand, 21516491 - 21516538
Alignment:
Q  374 tgatagtggataaactagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    ||||||||||||| |||| || |||||||||| |||||||||||||||    
T  21516491 tgatagtggataagctagctgattgaatttgttgtgtttggtaaaatt 21516538  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Complemental strand, 32348482 - 32348443
Alignment:
Q  382 gataaactagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  32348482 gataagctagttgattgaatttgtagtgtttggtaaaatt 32348443  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 374 - 421
Target Start/End: Complemental strand, 15804556 - 15804509
Alignment:
Q  374 tgatagtggataaactagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    |||||||||||||||||| || ||||||||||| ||||||||||||||    
T  15804556 tgatagtggataaactagctgattgaatttgtaatgtttggtaaaatt 15804509  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Complemental strand, 42034618 - 42034572
Alignment:
Q  374 tgatagtggataaactagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    ||||||||||||| ||||||| |||||||||| |||||||||||||||    
T  42034618 tgatagtggataa-ctagttgattgaatttgtggtgtttggtaaaatt 42034572  T

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Target: scaffold0040 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 376 - 421
Target Start/End: Original strand, 49753 - 49798
Alignment:
Q  376 atagtggataaactagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    ||||||||||||||||||| ||| ||||||||| ||||||||||||    
T  49753 atagtggataaactagttgattggatttgtagtatttggtaaaatt 49798  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 376 - 421
Target Start/End: Original strand, 32325994 - 32326039
Alignment:
Q  376 atagtggataaactagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    ||||||||||| ||||||| | ||||||||||||||||||||||||    
T  32325994 atagtggataagctagttgatggaatttgtagtgtttggtaaaatt 32326039  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 421
Target Start/End: Complemental strand, 32582670 - 32582631
Alignment:
Q  382 gataaactagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    ||||| ||||||| ||||||||||||||||||||||||||    
T  32582670 gataacctagttgattgaatttgtagtgtttggtaaaatt 32582631  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 363 - 421
Target Start/End: Original strand, 9198019 - 9198077
Alignment:
Q  363 gataagctaattgatagtggataaactagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    |||||||||| | |||| ||||||  |||||| |||||| |||||||||||||||||||    
T  9198019 gataagctaacttatagcggataagttagttgattgaatctgtagtgtttggtaaaatt 9198077  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 421
Target Start/End: Complemental strand, 35696693 - 35696648
Alignment:
Q  376 atagtggataaactagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    ||||||||||| ||||  | ||||||||||||||||||||||||||    
T  35696693 atagtggataagctagcagattgaatttgtagtgtttggtaaaatt 35696648  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 367 - 419
Target Start/End: Complemental strand, 35682732 - 35682680
Alignment:
Q  367 agctaattgatagtggataaactagttgtttgaatttgtagtgtttggtaaaa 419  Q
    |||| ||||||| || |||| ||| ||| ||||||||||||||||||||||||    
T  35682732 agcttattgatattgaataagctaattgattgaatttgtagtgtttggtaaaa 35682680  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 365 - 421
Target Start/End: Original strand, 25019471 - 25019527
Alignment:
Q  365 taagctaattgatagtggataaactagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    |||||||| ||||| | ||||||||||||  ||||||| ||||||||||||||||||    
T  25019471 taagctaaatgataatagataaactagtttgttgaattcgtagtgtttggtaaaatt 25019527  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 29861558 - 29861520
Alignment:
Q  383 ataaactagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    |||| ||||||| ||||||||||||||||||||||||||    
T  29861558 ataagctagttgattgaatttgtagtgtttggtaaaatt 29861520  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 421
Target Start/End: Complemental strand, 35764807 - 35764762
Alignment:
Q  376 atagtggataaactagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    ||||| ||||| ||||||| ||||||||| ||||||||||||||||    
T  35764807 atagttgataatctagttgattgaatttgcagtgtttggtaaaatt 35764762  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 421
Target Start/End: Original strand, 33583891 - 33583931
Alignment:
Q  381 ggataaactagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    |||||| ||||||| |||||||||||| |||||||||||||    
T  33583891 ggataagctagttgattgaatttgtagcgtttggtaaaatt 33583931  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 363 - 419
Target Start/End: Complemental strand, 17902883 - 17902827
Alignment:
Q  363 gataagctaattgatagtggataaactagttgtttgaatttgtagtgtttggtaaaa 419  Q
    |||||||||  | |||| |||||||||||||| || |||||||||||||||||||||    
T  17902883 gataagctagcttatagaggataaactagttgattaaatttgtagtgtttggtaaaa 17902827  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 374 - 421
Target Start/End: Complemental strand, 2942153 - 2942106
Alignment:
Q  374 tgatagtggataaactagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    |||||| |||||| ||||||| |||||||||||| |||||||||||||    
T  2942153 tgatagcggataagctagttggttgaatttgtagggtttggtaaaatt 2942106  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 19397644 - 19397595
Alignment:
Q  370 taattgatagtggataaactagttgtttgaatttgtagtgtttggtaaaa 419  Q
    ||||||||||| ||||||||| ||| |||||||| ||||||||| |||||    
T  19397644 taattgatagtagataaactaattgattgaatttatagtgtttgataaaa 19397595  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 421
Target Start/End: Original strand, 27611816 - 27611849
Alignment:
Q  388 ctagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    ||||||| ||||||||||||||||||||||||||    
T  27611816 ctagttgattgaatttgtagtgtttggtaaaatt 27611849  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 421
Target Start/End: Complemental strand, 30070376 - 30070331
Alignment:
Q  376 atagtggataaactagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    ||||||||||| |||| |  ||||||||||||||||||||||||||    
T  30070376 atagtggataagctagctaattgaatttgtagtgtttggtaaaatt 30070331  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 52327513 - 52327473
Alignment:
Q  381 ggataaactagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    |||||| |||| || ||||||||||||||||||||||||||    
T  52327513 ggataagctagctggttgaatttgtagtgtttggtaaaatt 52327473  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 395 - 423
Target Start/End: Original strand, 25129806 - 25129834
Alignment:
Q  395 tttgaatttgtagtgtttggtaaaatttg 423  Q
    |||||||||||||||||||||||||||||    
T  25129806 tttgaatttgtagtgtttggtaaaatttg 25129834  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 29234892 - 29234852
Alignment:
Q  381 ggataaactagttgtttgaatttgtagtgtttggtaaaatt 421  Q
    |||||| ||||||| |||||||||||||||||| |||||||    
T  29234892 ggataagctagttgattgaatttgtagtgtttgataaaatt 29234852  T

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