View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_low_16 (Length: 425)
Name: NF14138_low_16
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_16 |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 407
Target Start/End: Complemental strand, 2652790 - 2652400
Alignment:
| Q |
18 |
cattttttatcttgg-atgcaatgtgtgttgtctaatggaaagcaaatgatagccttttcatcggtgcttgaataagccaaacagtttttcatcatacat |
116 |
Q |
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| T |
2652790 |
cattttttatcttgggatgcaatgtgtgttgtctaatggaaagcaaatgatagccttttcatcggtgcttgaataagccaaacagtttttcatcatacat |
2652691 |
T |
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| Q |
117 |
gagactgttttggtgttactattcagctaagctatggtaattgttaacaaggtcactttctcaagtacattgcttgggtggttggtgtgcttaagctatt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2652690 |
gagactgttttggtgttactattcagctaagctatggtaattgttaacaaggtcactttctcaagtacatcgcttgggtggttggtgtgcttaagctatt |
2652591 |
T |
|
| Q |
217 |
cttgagtttaagcccctttttctcaaacaattccttttcttcttagacaagtttggagtgtagttagagaacaacaagcatacaaaatgtgtgaatattt |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2652590 |
cttgagtttaagcccctttttctcaaacaattccttttcttcttagacaagcttggagtgtagttagagaacaacaagcatacaaaatgtgtgaatattt |
2652491 |
T |
|
| Q |
317 |
cgtcagtctaatgaaatctcgatctcttttgacaaatacttctaattgaaggcatgttgtggtatctgacacatgtcatgtcttacacaga |
407 |
Q |
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|||||||||| | |||| | ||||| |||||||||| |||| | |||||||||||||| ||||||| ||||||||||||||||||||||| |
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| T |
2652490 |
cgtcagtctagtcaaattttgatcttttttgacaaacacttttgattgaaggcatgttccggtatctaacacatgtcatgtcttacacaga |
2652400 |
T |
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