View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_low_17 (Length: 411)
Name: NF14138_low_17
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 16 - 403
Target Start/End: Complemental strand, 49245253 - 49244866
Alignment:
| Q |
16 |
ttaacatcaatcaccatgattaattataatcaacctttaaatcccaaagaaaaacaaaccaattattcatcaattgaacctacaaactcataatctctct |
115 |
Q |
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| T |
49245253 |
ttaacatcaatcacaatgattaattataatcaacctttaaatcccaaagaaaaacaaaccaattattcatcaattgaacctacaaactcataatctctct |
49245154 |
T |
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| Q |
116 |
cttaatcttctcaataacagcaccattttgaaccaaagcagtgattgccaagatcaaattcccatcattaacagaaacattagcagctaaaacctcagct |
215 |
Q |
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| T |
49245153 |
cttaatcttctcaataacagcaccattttgaaccaaagcagtgattgccaagatcaaattcccatcattaacagaaacattagcagctaaaacctcagct |
49245054 |
T |
|
| Q |
216 |
tcattcttcaagaacaccttcaaaataacagtaatcaaaccaggtttagccacagattcaatcccaaagaaagccacattgcttgaaccagtaaccgtaa |
315 |
Q |
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| T |
49245053 |
tcattcttcaagaacaccttcaaaataacagtaatcaacccaggtttagccacagattcaatcccaaagaaagccacattgcttgaaccagtaaccgtaa |
49244954 |
T |
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| Q |
316 |
cagagcaattgggattcctattacgacagggaaccaacaaattaaaaaccccttcaacatgtttctttgattttgattccttcatctc |
403 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
49244953 |
cagagcaattgggattcctattacgacagggaaccaacaaattaaaacccctttcaacatgtttctttgattttgattccttcatctc |
49244866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 139 - 267
Target Start/End: Complemental strand, 49059504 - 49059376
Alignment:
| Q |
139 |
cattttgaaccaaagcagtgattgccaagatcaaattcccatcattaacagaaacattagcagctaaaacctcagcttcattcttcaagaacaccttcaa |
238 |
Q |
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||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||| || |||||| |||||||| ||| | || || | |||||| |
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| T |
49059504 |
cattttgaaccaatgcagtgattgccaagatcaaatttccatcattaacagagacatttgccactaaaatctcagcttgattgtccacaaatatcttcaa |
49059405 |
T |
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| Q |
239 |
aataacagtaatcaaaccaggtttagcca |
267 |
Q |
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||| ||||| |||||||||| |||||| |
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| T |
49059404 |
aatcgcagtagccaaaccaggtctagcca |
49059376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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