View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14138_low_2 (Length: 638)
Name: NF14138_low_2
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 13099324 - 13099666
Alignment:
| Q |
18 |
acaatattgattcagacctttgaacagaagccagtattattaattgatattttgtacacagaatcaacttaggattctcaatttaatatatctatactat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13099324 |
acaatattgattcagacctttgaacagaagctagtattattaattgatattttgtacacagaatcaacttaggattctcaatttaatatatctatactat |
13099423 |
T |
|
| Q |
118 |
tctctgaacagaatactcttttggatcgatgtgaattaattgcatgaataaattttgggtttttcgaaaattataagagtaagaagtaaaatgacaaagc |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
13099424 |
tctctgaacagaatactcttttggatcgatgtgaattaattgcatgaataaattttgggtttttcgaaatttataagagtaagaagtaaaatgacaaagc |
13099523 |
T |
|
| Q |
218 |
agaagaaaacaaaacctcatagcccaatcaacttcatgtgggttcactctgccatgactctgctaactatacaggaaaaaagggtataatcgtctgctaa |
317 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13099524 |
acaaaaaaacaaaacctcatagcccaatcaacttcatgtgggttcactctgccatgactctgctaactatacaggaaaaaagggtataatcgtctgctaa |
13099623 |
T |
|
| Q |
318 |
cttttgtcactattatcgcataagatttttaagtcggtccatc |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13099624 |
cttttgtcactattatcgcataagatttttaagtcggtccatc |
13099666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 18 - 360
Target Start/End: Original strand, 13029144 - 13029485
Alignment:
| Q |
18 |
acaatattgattcagacctttgaacagaagccagtattattaattgatattttgtacacagaatcaacttaggattctcaatttaatatatctatactat |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13029144 |
acaatattgattcagacctttgaacagaagctagtattattaattgatattttgaacacagaatcaacttaggattctcaatttaatatatctatactat |
13029243 |
T |
|
| Q |
118 |
tctctgaacagaatactcttttggatcgatgtgaattaattgcatgaataaattttgggtttttcgaaaattataagagtaagaagtaaaatgacaaagc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13029244 |
tctctgaacagaatactcttttggatcgatgtgaattaattgcatgaataaattttgggtttttcgaaaattataagagtaagaagtaaaatgacaaagc |
13029343 |
T |
|
| Q |
218 |
agaagaaaacaaaacctcatagcccaatcaacttcatgtgggttcactctgccatgactctgctaactatacaggaaaaaagggtataatcgtctgctaa |
317 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13029344 |
acaagaaaacaaaacctcatagcccaatcaacttcatgtgggttcattctgccatg-ctctgctaactatacaggaaaaaagggtataatcgtctgctaa |
13029442 |
T |
|
| Q |
318 |
cttttgtcactattatcgcataagatttttaagtcggtccatc |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13029443 |
cttttgtcactattatcgcataagatttttaagtcggtccatc |
13029485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 465 - 624
Target Start/End: Original strand, 13099769 - 13099928
Alignment:
| Q |
465 |
aattctaaaatcttgcattctcaaagccatgtaaatcactaactctattcatagactttctcatgatagcaactttagccaatctctcagcagctctcca |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13099769 |
aattctaaaatcttgcattctcaaagccatgtaaatcactaactctattcatagactttctcatgatagcaactttagccaatctctcagcagctctcca |
13099868 |
T |
|
| Q |
565 |
agccgatgtcggcgtaagcggctctaatttctcctcggagcgactattcctccgcctttg |
624 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13099869 |
agccgatgtcggcgtaagcggctctaatttctcctcggagcgactattcctccgcctttg |
13099928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 465 - 622
Target Start/End: Original strand, 13029586 - 13029743
Alignment:
| Q |
465 |
aattctaaaatcttgcattctcaaagccatgtaaatcactaactctattcatagactttctcatgatagcaactttagccaatctctcagcagctctcca |
564 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13029586 |
aattctaaaatcttgcattctcaaagccatgtaaatcactaactctattcatagactttctcatgatagcaactttagccaatctctcagcagctctcca |
13029685 |
T |
|
| Q |
565 |
agccgatgtcggcgtaagcggctctaatttctcctcggagcgactattcctccgcctt |
622 |
Q |
| |
|
|||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
13029686 |
agccgatgtcggcgtaagtggctctaatttatcctcagagcgactattcctccgcctt |
13029743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 485 - 588
Target Start/End: Original strand, 28181367 - 28181470
Alignment:
| Q |
485 |
tcaaagccatgtaaatcactaactctattcatagactttctcatgatagcaactttagccaatctctcagcagctctccaagccgatgtcggcgtaagcg |
584 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||| | ||||||| ||| ||||||||||| |||||||||||| |
|
|
| T |
28181367 |
tcaaagccatgtaaatcactgactttattcatagactttctcatgatagccactttagccagtttctcagctgctttccaagccgatatcggcgtaagcg |
28181466 |
T |
|
| Q |
585 |
gctc |
588 |
Q |
| |
|
|||| |
|
|
| T |
28181467 |
gctc |
28181470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University