View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14138_low_21 (Length: 395)
Name: NF14138_low_21
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 376
Target Start/End: Original strand, 25534552 - 25534927
Alignment:
| Q |
1 |
acaaagacaaaatatgcttagggtgtagcttagtttatgtaaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggattggattcagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25534552 |
acaaagacaaaatatgcttagggtgtagctcagtttatgtaaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggattggattcagaa |
25534651 |
T |
|
| Q |
101 |
tcctttgattcatcattcttcctcttcttttttcaaagttcgacctgagttggaccattcttaatcaagtaatcgaaccaaccaccttgagaccaccctc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25534652 |
tcctttgattcatcattcttcctcttcttttttcaaagttcgacctgagttggaccattcttaatcaagtaatcgaaccaaccaccttgagaccaccctc |
25534751 |
T |
|
| Q |
201 |
catcattttgttataagtcatgtaagcatcatcgatcctattcagtttaaaatatctgtgaatcaaaaacgagtgtgtccacacatccggagtcatagac |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25534752 |
catcatgttgttataagtcatgtaagcatcatcgatcctattcagtttaaaatatctgtgaatcaaaaacgagtgtgtccacacatccggagtcatagac |
25534851 |
T |
|
| Q |
301 |
atggagtacatctcttgaaatatattctcagcttcagacaacatatcatattcatggaaactggagatgagcttag |
376 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
25534852 |
atggagtacatctcttgaaatagattctcagcttcagacaacatatcatattcatcgaaactggagatgagcttag |
25534927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 25526548 - 25526710
Alignment:
| Q |
1 |
acaaagacaaaatatgcttagggtgtagcttagtttatgtaaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggattggattcagaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25526548 |
acaaagacaaaatatgcttagggtgtagcttagtttatgtaaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggattggattcagaa |
25526647 |
T |
|
| Q |
101 |
t-cctttgattcatcattcttcctcttcttttttcaaagttcgacctgagttggaccattcttaatcaa |
168 |
Q |
| |
|
| ||||||||||||||| ||||||| ||||||||||||| | |||||||||||||||||||||| |
|
|
| T |
25526648 |
tccctttgattcatcat------tcttcttatttcaaagttcgatccgagttggaccattcttaatcaa |
25526710 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 41 - 349
Target Start/End: Complemental strand, 25515864 - 25515555
Alignment:
| Q |
41 |
aaaatgtcctactgttaaatgttaggatgtagtgctttccttttgggattggattcagaatc-ctttgattcatcattcttcctcttcttttttcaaagt |
139 |
Q |
| |
|
|||||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||| || ||||||||| || ||| | | |||||||||||| |
|
|
| T |
25515864 |
aaaatgtcatactgttaaatgttaggatgcactgctttccttttgggattggattcagaatcactatgattcatctttgttcttat--ttttttcaaagt |
25515767 |
T |
|
| Q |
140 |
tcgacctgagttggaccattcttaatcaagtaatcgaaccaaccaccttgagaccaccctccatcattttgttataagtcatgtaagcatcatcgatcct |
239 |
Q |
| |
|
|| | ||||| |||||||||||||||||| ||| || | |||||||||||||| |||||| |||||||||| |||| ||||||||| |||||| |
|
|
| T |
25515766 |
gtgatccgagtttgaccattcttaatcaagtcatcatacaatccaccttgagaccagcctccaccattttgttaattatcatcaaagcatcatggatcct |
25515667 |
T |
|
| Q |
240 |
attcagtttaaaatatctgtgaatcaaaaacgagtgtgtccacac--atccggagtcatagacatggagtacatctcttgaaatatattctcagcttcag |
337 |
Q |
| |
|
|| || ||||| |||| || |||| | ||||| | | | |||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
25515666 |
atccactttaatatatgcagcaaacaaagttgtgtgtgcgcgcgcttatccggggtcatagacatggagtacatctcttgaaatagattctcagcttcag |
25515567 |
T |
|
| Q |
338 |
acaacatatcat |
349 |
Q |
| |
|
|||||||||||| |
|
|
| T |
25515566 |
acaacatatcat |
25515555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 284 - 373
Target Start/End: Original strand, 25526803 - 25526892
Alignment:
| Q |
284 |
catccggagtcatagacatggagtacatctcttgaaatatattctcagcttcagacaacatatcatattcatggaaactggagatgagct |
373 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| | || |||| |||||||||||| |
|
|
| T |
25526803 |
catccggggtcatagacatggagtacatatcttgaaatagattctcagcttcagacaacatatcatgtgcacagaaaatggagatgagct |
25526892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 375
Target Start/End: Original strand, 25544412 - 25544493
Alignment:
| Q |
294 |
catagacatggagtacatctcttgaaatatattctcagcttcagacaacatatcatattcatggaaactggagatgagctta |
375 |
Q |
| |
|
||||| ||||||||||||||||||||| ||||||||||| |||||| ||| |||||||| ||| ||||||| |||||| |
|
|
| T |
25544412 |
catagtcatggagtacatctcttgaaactgattctcagctttagacaaaataccatattcacagaacgtggagataagctta |
25544493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 41 - 72
Target Start/End: Original strand, 25541089 - 25541120
Alignment:
| Q |
41 |
aaaatgtcctactgttaaatgttaggatgtag |
72 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
25541089 |
aaaatgtcctactgttaaatgttaggatgtag |
25541120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 33 - 133
Target Start/End: Original strand, 7946623 - 7946725
Alignment:
| Q |
33 |
gtttatgtaaaatgtcctactgttaaatg-ttaggatgtagtgctttccttttgggattggattcagaat-cctttgattcatcattcttcctcttcttt |
130 |
Q |
| |
|
|||| |||||||||||||||| ||||||| ||||||| ||||| ||| ||||| |||||||| |||| || ||||||||||||| ||||| || ||| || |
|
|
| T |
7946623 |
gtttgtgtaaaatgtcctactattaaatgtttaggatttagtgattttctttttggattggaatcaggatccctttgattcatctttctttcttttcatt |
7946722 |
T |
|
| Q |
131 |
ttt |
133 |
Q |
| |
|
||| |
|
|
| T |
7946723 |
ttt |
7946725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University