View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_low_22 (Length: 381)
Name: NF14138_low_22
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 16 - 372
Target Start/End: Original strand, 42848939 - 42849280
Alignment:
| Q |
16 |
gatataacttgattaggcttataattctttcccttctttactaggaattgtcaattcattgcgtgtctctttttctgcagaaggtgttacaattatctct |
115 |
Q |
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| T |
42848939 |
gatataactt-attaggcttataattctttcccttctttactaggaattgtcaattcattgcgtgtctctt-----------ggtgttacaattatctct |
42849026 |
T |
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| Q |
116 |
ttactagaaatttaaattggaaacgaagtttaaaatcaaggttgttgatcgatgatgtgaagtactattcccttcatggatttcaacatgcttgttctgc |
215 |
Q |
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| T |
42849027 |
ttactagaaatttaaattggaaacgaagtttaaaatcaaggttgttgat----gatgtgaagtactattcccttcatggatttcaacatgcttgttcttc |
42849122 |
T |
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| Q |
216 |
cattagaaatcatgcttttgtcatccacttttctttttgcctttgacttatcagagcaaaaatttaagacaaaatggaattttaatttttaactttatca |
315 |
Q |
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| T |
42849123 |
cattagaaatcatgcttttgtcatccacttttctttttgcctttgacttatcagagcaaaaatttaagacaaattggaattttagtttttaactttatca |
42849222 |
T |
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| Q |
316 |
-tcaacaaagtaatcctttgcattgtcttcacgtagtaccacagtatatgagaattat |
372 |
Q |
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| T |
42849223 |
ttcaacaaagtaatcctttgcattgtcttcacgtagtaccacaatatatgagaattat |
42849280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 15 - 107
Target Start/End: Original strand, 42855580 - 42855673
Alignment:
| Q |
15 |
agatataacttgattaggcttataattctttcccttctttactaggaattgtcaattcattgcgtgtctct-ttttctgcagaaggtgttacaa |
107 |
Q |
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| T |
42855580 |
agatataacttgattaggcttataactctttcccttctttactaggaattgtcaattcattgcgtgtctttcttttttgcagaaggtgttacaa |
42855673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 222 - 303
Target Start/End: Original strand, 42856026 - 42856106
Alignment:
| Q |
222 |
aaatcatgcttttgtcatccacttttctttttgcctttgacttatcagagcaaaaatttaagacaaaatggaattttaattt |
303 |
Q |
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| T |
42856026 |
aaatcatgcttttctcatccacttttctttttggctttgtcttatcatagcaaaaattcaagacaaaa-ggaatttcaattt |
42856106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 315
Target Start/End: Original strand, 42862724 - 42862838
Alignment:
| Q |
200 |
aacatgcttgttctgccattagaaatcatgcttttgtcatccacttttctttttgcctttgacttatcagagcaaaaatttaagacaaaatggaatttta |
299 |
Q |
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| T |
42862724 |
aacatgtttgtgttgccattgaaaattatgcttttctcatccatttctccttttgcctttgtcttatcaaagcaaaaattcaagac-acatggaatttcg |
42862822 |
T |
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| Q |
300 |
atttttaactttatca |
315 |
Q |
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| T |
42862823 |
atttttacctttatca |
42862838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 43 - 85
Target Start/End: Original strand, 42857184 - 42857226
Alignment:
| Q |
43 |
tttcccttctttactaggaattgtcaattcattgcgtgtctct |
85 |
Q |
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| T |
42857184 |
tttcccttctttactaggaattgtcaattcattgcgagtctct |
42857226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 246 - 325
Target Start/End: Original strand, 42857614 - 42857693
Alignment:
| Q |
246 |
ttctttttgcctttgacttatcagagcaaaaatttaagacaaaatggaattttaatttttaactttatca-tcaacaaagt |
325 |
Q |
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| T |
42857614 |
ttctttttgccttttccttatcatagcaaaaattcaagac-aaatgaaatttcaatttttacctttatcattcaacaaagt |
42857693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 76
Target Start/End: Original strand, 42861513 - 42861557
Alignment:
| Q |
32 |
gcttataattctttcccttctttactaggaattgtcaattcattg |
76 |
Q |
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| T |
42861513 |
gcttataactatttcccttctttactaggaactgacaattcattg |
42861557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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