View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14138_low_24 (Length: 379)
Name: NF14138_low_24
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_24 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 14 - 379
Target Start/End: Original strand, 36603181 - 36603546
Alignment:
| Q |
14 |
catcaaggttatttccccaccaatcaatacttatttcctctaatcctaaacaaaggtacaaaaccacacccatgaaagcaagaccagcatccaatgcacc |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36603181 |
catcaaggttatttccccaccaatcaatacttatttcctctaatcctaaacaaaggtacaaaaccacacccatgaaagcaagaccagcatccaatgcacc |
36603280 |
T |
|
| Q |
114 |
agacaacacataattatgacgctgccaccaatctggtttatacctatacacaacaaacccagacaaaaaaccaacaatgatccagctagtgtaattcact |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36603281 |
agacaacacataattatgacgctgccaccattctggcttatacctatacacaacaaaaccagacaaaaaaccaacaatgatccagctagtgtaattcact |
36603380 |
T |
|
| Q |
214 |
gctgtagctggtggcatcattccagtagcacctatcaacacaggcatgttgatgagtttaatccattcttgttgtggaaaggctcttgtagctaaccaaa |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36603381 |
gctgtagctggtggcatcattccagtagcacctatcaacacaggcatgttgatgagtttaatccattcttgttgtggaaaggctcttgtagctaaccaaa |
36603480 |
T |
|
| Q |
314 |
ctaacaaaggagcaatggctccacctaggaagaaccaattgatattctcgtaggttcctaagtttc |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36603481 |
ctaacaaaggagcaatggctccacctaggaagaaccaattgatattctcgtaggttcctaagtttc |
36603546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University