View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14138_low_25 (Length: 377)
Name: NF14138_low_25
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_25 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 12 - 360
Target Start/End: Original strand, 1248227 - 1248576
Alignment:
| Q |
12 |
aatactcatatttgaagagctttacatcacatagctccctgctcacatgtgtgaaacttgcttatttcaaatgaataatgcaacaaaattattattttac |
111 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1248227 |
aatactcatatttgaagggctttacatcacatagctccctgctcacatgtgtgaaacttgcttatttcaaatgaataatgcaacaaaattattattttac |
1248326 |
T |
|
| Q |
112 |
tggtttatatggacacaatctctatacatataaaaaagtttcggtgtcatattccnnnnnnn-gaccccaaccagaaagaaattattacatgatcttgga |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1248327 |
tggtttatatggacacaatctctatacatataaaaaagtttcggtgtcatattccaaaaaaaagaccccaaccagaaagaaattattacatgatcttgga |
1248426 |
T |
|
| Q |
211 |
ccaatacattatttgtgatcttgatgaagatttttacattgttgttaaagtaataaaattccaaaaataatcaaactttttcggaaataaacatgcaagg |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1248427 |
ccaatacattatttgtgatcttgatgaagatttttactttgttgttaaagtaataaaattccaaaaataatcaaactttttcggaaataaacatgcaagg |
1248526 |
T |
|
| Q |
311 |
tactcattataaaggagttttggaccctataagtacccttcatttatttc |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1248527 |
tactcattataaaggagttttggaccctataagtacccttcatttatttc |
1248576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University