View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_low_26 (Length: 368)
Name: NF14138_low_26
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_26 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 354
Target Start/End: Complemental strand, 43013842 - 43013479
Alignment:
| Q |
1 |
ttcctatactttagtttaacagttaacacgtttctttagtgacatagttgcctggtcaatttagcgttgctatttattgggtagatctaattatagttct |
100 |
Q |
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| T |
43013842 |
ttcctatactttagtttaacagttaacacgtttctttagtgacttagttgcctggtcaatttagcgttgctatttattgggtacatctaattatagttct |
43013743 |
T |
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| Q |
101 |
actaccaggtcacaactttttggtttaagtatttatcaatcaaaata--gataagttacttgttctctattctatatttttagagttgtgctattttcat |
198 |
Q |
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| T |
43013742 |
ac---caggtcacaactttttggtttaagtatttatcaatcaaaatatagataagttacttgttttctattctatatttttagagttgtgctattttcat |
43013646 |
T |
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| Q |
199 |
accaatattttttgttgtttataactttataacgattctatcttttatttcttcaacaaaatatccaactatgttat-----------aacgagggaata |
287 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| || |
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| T |
43013645 |
accaatattttttgttgtttataactttataacgattctatcttttatttcttcaacaaaatatccaactatgttttttttttttttgaacgagggatta |
43013546 |
T |
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| Q |
288 |
tgttttataaagattatttgataatttttgtagttttgattgacgatactttaccattaaagaatct |
354 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43013545 |
tgttttataaagattatttgataatttttgtagttttgattgacgatactttaccattaaagaatct |
43013479 |
T |
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