View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14138_low_3 (Length: 625)
Name: NF14138_low_3
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 522; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 17 - 615
Target Start/End: Original strand, 30081726 - 30082322
Alignment:
| Q |
17 |
agattctagactatttcctcctccattagctagggagatattttactacgataacaggtaaatagccacccacaaataagctcagtaggaaaaacaacag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
30081726 |
agattctagactatttcctcctccattagctagggagatattctactacgataacaggtaaatagccacccacaaataagctcagtagaaaaaacaacag |
30081825 |
T |
|
| Q |
117 |
acaaaacatgctcaaagaattgcaatgcagctgcatgtttgtattacaatatttcctaacaaaaactcttgccnnnnnnnaatcataataaaagaaagcc |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
30081826 |
acaa--catgctcaaagaattgcaatgcagctgcatgtttgtattacaatatttcctaacaaaaactcttgcctttttttaatcattataaaagaaagcc |
30081923 |
T |
|
| Q |
217 |
gtagaggtgtagaacaataagctttgggatctataggaaagcagttacatggtggtaactaaattacagaaaacaaacttcttgacagaggacnnnnnnn |
316 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30081924 |
gtagaggtgtggaacaataagctttgggatctataggaaagcagttacatggtggtaactaaattacagaaaacaaacttcttgacagaggacaaaaaaa |
30082023 |
T |
|
| Q |
317 |
tagaagggaaaaagttagcacatcaactcaatattttatgaattgtaaaccattagcatcagagtatcgctccatgaatctcatgaacctatcccagtcc |
416 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30082024 |
tagaagggaaaaagttagaacatcaactcaatattttatgaattgtaaaccattagcatcagagtatcgctccatgaatctcatgaacctatcccagtcc |
30082123 |
T |
|
| Q |
417 |
cgtggagtccgcattatatacttggcttcaattcctgagggctttccgttgacaaatttagcatttacatcaacagattgaaggactccttcctcatcaa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30082124 |
cgtggagtccgcattatatacttggcttcaattcctgagggctttccgttgacaaatttagcatttacatcaacagattgaaggactccttcctcatcaa |
30082223 |
T |
|
| Q |
517 |
tcatataaaaaccagtaatgtcgcctacttctccagaagaatcaaaaactgagggttgatcaaacctgaagatagccatgccatttgttccatcctttg |
615 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30082224 |
tcatataaaaaccagtaatgtcacctacttctccagaagaatcaaaaactgagggttgatcaaacctgaagatagccatgccatttgttccatcctttg |
30082322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University