View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_low_33 (Length: 345)
Name: NF14138_low_33
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 8e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 8e-89
Query Start/End: Original strand, 23 - 200
Target Start/End: Original strand, 2652776 - 2652953
Alignment:
| Q |
23 |
ccaagataaaaaacgtcaaaatgctaccaattttttcaattaaataaaaaagtctcaatgtctgatgcacaaacatcacatcaaacaatcgctaagaaca |
122 |
Q |
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| T |
2652776 |
ccaagataaaaaatgtcaaaatgctaccaattttttcaattaaataaaaaagtctcaatgtctgatgcacaaacatcacatcaaacaatcgctaagaaca |
2652875 |
T |
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| Q |
123 |
ttaaatattaacaaagtcactaattaattccttcaaaatagaactacaaaggaacgattaaacataaaatttgttcat |
200 |
Q |
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| T |
2652876 |
ttaaatattaacaaagtcactaattaattccttcaaagtagaactacaaaggaacaattaaacataaaatttgttcat |
2652953 |
T |
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Back To:
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Target: chr8; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 231 - 337
Target Start/End: Original strand, 2652984 - 2653090
Alignment:
| Q |
231 |
tacattcacatttctcattagactcaaaagaaactcacctacaattccatttgagaagtccactacccagttagttagcatctaactcactcattcactt |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2652984 |
tacattcacatttctcattagactcaaaagaaactcacctacaattccatttgagaagtccactacccagttagttagcatctaactcactcattcactt |
2653083 |
T |
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| Q |
331 |
gatgatg |
337 |
Q |
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| T |
2653084 |
gatgatg |
2653090 |
T |
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