View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_low_36 (Length: 316)
Name: NF14138_low_36
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 241; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 20 - 272
Target Start/End: Original strand, 2653164 - 2653416
Alignment:
| Q |
20 |
ctcaagatgaaaaggaatagtatcaacaatgcaatcactctcattagaaaccattgtaggaataacaggttcataataagagcaagaaccatatgattca |
119 |
Q |
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| T |
2653164 |
ctcaagatgaaaaggaatagtatcaacaatgcaatcactctcattagaaaccattgtaggaagaacaggttcataataagaacaagaaccatatgattca |
2653263 |
T |
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| Q |
120 |
tcaacaaatgtaaaaccatcatccaaatattcctctccagttatctcttttatccattcttgatcattcatcctttcactccaaatttcactcacagatt |
219 |
Q |
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| T |
2653264 |
tcaacaaatgtaaaaccatcatccaaatattcctctccagttatctcttttatccattcttgatcattcatcctttcactccaaatttcactcacagatt |
2653363 |
T |
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| Q |
220 |
cttgagaataagatgaactaccattacaatcctcaacagaaacattatcacca |
272 |
Q |
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| T |
2653364 |
cttgagaataagatgaactaccattacaatcctcaacagacacattatcacca |
2653416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 303
Target Start/End: Original strand, 2653442 - 2653471
Alignment:
| Q |
274 |
attcatctttcactgatcttttcttctgtg |
303 |
Q |
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| T |
2653442 |
attcatctttcactgatcttttcttctgtg |
2653471 |
T |
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