View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_low_38 (Length: 303)
Name: NF14138_low_38
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 14 - 282
Target Start/End: Original strand, 32587094 - 32587343
Alignment:
| Q |
14 |
atgaatacaaacccaagagattatagcacacaaaactacgataattgtgtgggtgctgctgatatgtgtgttgttgagtttagcaatttataatctgatg |
113 |
Q |
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| T |
32587094 |
atgaatacaaacccaagagattatagcacacaaaactacgataattgtgtgggtgctgctgatctgtgtgttg---agtttagcaatttataatctgatg |
32587190 |
T |
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| Q |
114 |
tcaaaacataattgaatgtaatcccatgtgtcagtgtcagtgtcgtgtcgatgttggaaagtagacgcaacttcaattagaagtgttaatgctatacagg |
213 |
Q |
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| T |
32587191 |
tcaaaacataattgaatgtaatcacatgtgtcagtgtcagtgt-----cgatgttggacagtagacacaccttcaattagaagtgttaatgctatacagg |
32587285 |
T |
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| Q |
214 |
tgaaaaacccaattgaggaagtgttaaagtcacagtgcactgtatgtgctaaacacatttcgacatcat |
282 |
Q |
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| T |
32587286 |
tgaaaaacccaattgaggaagtgttaaag-----------tgtatgtgctaaacacatttcgacatcat |
32587343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 14 - 86
Target Start/End: Original strand, 32662556 - 32662628
Alignment:
| Q |
14 |
atgaatacaaacccaagagattatagcacacaaaactacgataattgtgtgggtgctgctgatatgtgtgttg |
86 |
Q |
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| T |
32662556 |
atgaatacaaacccaagagcttatagtacacaaaactacgataagtgtgtgggtgctgctgacatgtgtgttg |
32662628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 32636885 - 32636954
Alignment:
| Q |
17 |
aatacaaacccaagagattatagcacacaaaactacgataattgtgtgggtgctgctgatatgtgtgttg |
86 |
Q |
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| T |
32636885 |
aatacaaacccaaaagctcatagcacacaaaactacgataagtgtgtggatgctacttacatgtgtgttg |
32636954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 171
Target Start/End: Original strand, 32638457 - 32638506
Alignment:
| Q |
121 |
ataattgaatgtaatcccatgtgtcagtgtcagtgtcgtgtcgatgttgga |
171 |
Q |
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| T |
32638457 |
ataattgaatgtaatcacatgtgtcagtgtc-gtgtcgtgtcggtgttgga |
32638506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 219
Target Start/End: Original strand, 32638544 - 32638579
Alignment:
| Q |
184 |
cttcaattagaagtgttaatgctatacaggtgaaaa |
219 |
Q |
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| T |
32638544 |
cttcaattagaagtgttgatgctatacaggtgaaaa |
32638579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 55863431 - 55863362
Alignment:
| Q |
17 |
aatacaaacccaagagattatagcacacaaaactacgataattgtgtgggtgctgctgatatgtgtgttg |
86 |
Q |
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| T |
55863431 |
aatacaaacccaagagcttatagcacacaaaactacgacaattgtgtggatgctactgacatgtgtgttg |
55863362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 156
Target Start/End: Complemental strand, 39621527 - 39621490
Alignment:
| Q |
119 |
acataattgaatgtaatcccatgtgtcagtgtcagtgt |
156 |
Q |
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| T |
39621527 |
acataattgaatgtaatcacatgtgtcagtgtctgtgt |
39621490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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