View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_low_44 (Length: 277)
Name: NF14138_low_44
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_44 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 11676287 - 11676017
Alignment:
| Q |
1 |
cattatcatttagagaagtaggctttgaataatttgcagttatatgtttatcatttataatgttaattggcacatggaaattaagatgttgcttctcttt |
100 |
Q |
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| T |
11676287 |
cattatcatttagagaagtaggctttgaataatttgcagttatatgttaatcatttataatgttaattggcaaatggaaattaagatgttgcttcccttt |
11676188 |
T |
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| Q |
101 |
attggcaaannnnnnnncc-tttaaaactgtgtctacactaataactgatttctaataccaggccgcatccaaatgaatgttccggaagtgatcttgacg |
199 |
Q |
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| T |
11676187 |
attggcaatttttttttccctttaaaactgtgtctacactaataactgatttcttataccaggccgcatccaaatgaatgttccggaagtgatcttgacg |
11676088 |
T |
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| Q |
200 |
gggacatctactttgtttgttgggatcctgaattgattccacctagaacaattgaaccaatggagtataat |
270 |
Q |
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| T |
11676087 |
gggacatctactttgtttgttgggatcctgaattgattccacctagaacaattgaaccaatggagtataat |
11676017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 267
Target Start/End: Complemental strand, 11684022 - 11683752
Alignment:
| Q |
1 |
cattatcatttagagaagtaggctttgaataatttgcagttatatgtttatcatttataatgttaatt-ggcacatggaaattaagatgttgcttctctt |
99 |
Q |
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| T |
11684022 |
cattatcatttagagaagtaggctttgaataatttgcagttataggtttatcatatagaatgttactttggtaaatggaaattaagatgttgcttctctt |
11683923 |
T |
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| Q |
100 |
tattggcaaannnnnnnnccttt-aaaactgt--gtctacactaataactgatttctaataccaggccgcatccaaatgaatgttccggaagtgatcttg |
196 |
Q |
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| T |
11683922 |
tatcggcaattttttttttcttttaaaactgtctgtctacactaataactgatttctaataccaggccacatccaaatgaatgttccggaagtgatctag |
11683823 |
T |
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| Q |
197 |
acggggacatctactttgtttgttgggatcctgaattgattccacctagaacaattgaaccaatggagtat |
267 |
Q |
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| T |
11683822 |
acggggacatatactttgtttgctgggattctgaattgattccacctagaacaattgaaccaatggagtat |
11683752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 130 - 267
Target Start/End: Original strand, 11630367 - 11630504
Alignment:
| Q |
130 |
tgtctacactaataactgatttctaataccaggccgcatccaaatgaatgttccggaagtgatcttgacggggacatctactttgtttgttgggatcctg |
229 |
Q |
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| T |
11630367 |
tgtctacactcataactgatttctaataccaggccacatccaaatgaatgttccggaagtgatctagacggggacatctactttgtttgttgggattctg |
11630466 |
T |
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| Q |
230 |
aattgattccacctagaacaattgaaccaatggagtat |
267 |
Q |
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| T |
11630467 |
aattgattccacccaagacaattgatccaatggagtat |
11630504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 146 - 267
Target Start/End: Original strand, 11638755 - 11638876
Alignment:
| Q |
146 |
tgatttctaataccaggccgcatccaaatgaatgttccggaagtgatcttgacggggacatctactttgtttgttgggatcctgaattgattccacctag |
245 |
Q |
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||||||||||||||||||| |||||||| || ||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11638755 |
tgatttctaataccaggccacatccaaacgagtgttccggaagtgatctagatggggacatctactttgtttgttgggattctgaattgattccaccctt |
11638854 |
T |
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| Q |
246 |
aacaattgaaccaatggagtat |
267 |
Q |
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|||||||| |||||||||||| |
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| T |
11638855 |
gacaattgatccaatggagtat |
11638876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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