View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_low_49 (Length: 253)
Name: NF14138_low_49
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 36321905 - 36321653
Alignment:
| Q |
1 |
ttctgtccccttttgaacctttgcagattgctttctttgcagaagctgtagcaatacataatcttaaacacacattcacaatgatgtataaatatcaact |
100 |
Q |
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| T |
36321905 |
ttctgtccccttttgaacctttgcagattgctttctttgcagaagctgtagcaatacataatcttaaacacacattcacaatgatgtataagtatcaact |
36321806 |
T |
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| Q |
101 |
tatatttgaaacatataatcaatcacttacctcttgtttcctcttgcgctcagcttcagcctatttcggatttaaatagat--atatgttaagcatcaga |
198 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
36321805 |
tatatttgaaacatataatcaatcacttacctcttgtttcctcttgcgctcagcttcagcctatttcggatttaaatagatatatatgttaagcatcaga |
36321706 |
T |
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| Q |
199 |
aaacataaatcatcaagnnnnnnnncaagaacagtatattcaatttcagtatt |
251 |
Q |
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| T |
36321705 |
aaacataaatcatcaagaaaaaaaacaagaacagtatattcaatttcagtatt |
36321653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 91 - 211
Target Start/End: Complemental strand, 36306377 - 36306255
Alignment:
| Q |
91 |
aatatcaacttatatttgaaacatataatcaatcacttacctcttgtttcctcttgcgctcagcttcagcctatttcggatttaaatagat--atatgtt |
188 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
36306377 |
aatatcaacttatatttgaaacatgtaatcaatcacttacctcttgtttcctcttgctctcagcttcagcctatttcagatttaaatagatatatatgtt |
36306278 |
T |
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| Q |
189 |
aagcatcagaaaacataaatcat |
211 |
Q |
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| T |
36306277 |
aagcatcagaaaacataaatcat |
36306255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 30784146 - 30784085
Alignment:
| Q |
1 |
ttctgtccccttttgaacctttgcagattgctttctttgcagaagctgtagcaatacataat |
62 |
Q |
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||||||||||||||||||||||| |||||||||||||||| ||| |||||||| ||||||| |
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| T |
30784146 |
ttctgtccccttttgaacctttgttgattgctttctttgcaaaagttgtagcaacacataat |
30784085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 45627993 - 45627932
Alignment:
| Q |
1 |
ttctgtccccttttgaacctttgcagattgctttctttgcagaagctgtagcaatacataat |
62 |
Q |
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|||||||||||||||||||||||| ||||||||||||||| ||| |||||||| ||||||| |
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| T |
45627993 |
ttctgtccccttttgaacctttgctaattgctttctttgcaaaagttgtagcaacacataat |
45627932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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