View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14138_low_51 (Length: 252)
Name: NF14138_low_51
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_51 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 23 - 252
Target Start/End: Original strand, 37604370 - 37604598
Alignment:
| Q |
23 |
agcttcaatccaaacctgtttccccacttcacatccgataaaaatgtgccaatcattctcataattggtctcacagcaggggcagtagtccgaagaagga |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37604370 |
agcttcaatccaaacctgtttccccacttcacatccgataaaaatgtgccaatcattctcataattggtctcacagaaggggcagtagtccgaagaaggg |
37604469 |
T |
|
| Q |
123 |
annnnnnnttccttgaagtctcatatatgcgaagggagtacacccctcaacaaactccatnnnnnnnctttgatccgttgaggtatgtgcagattccaca |
222 |
Q |
| |
|
| ||||||||||||| |||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
37604470 |
a-ccccccttccttgaagtcttatatatgcgaagggagaacacccctcaacaacctccataaaaaaactttgatccgttgaggtatgtgcagattccaca |
37604568 |
T |
|
| Q |
223 |
ttctcatccaatctcccggcattctatact |
252 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
|
|
| T |
37604569 |
ttctcgtccaatctcccggcattctatact |
37604598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 249
Target Start/End: Original strand, 8178756 - 8178980
Alignment:
| Q |
21 |
ccagcttcaatccaaacctgtttccccacttcacatccgataaaaatgtgccaatcattctcataattggtctcacagcaggggcagtagtccgaagaag |
120 |
Q |
| |
|
|||||||||||||| || |||||| | || |||||||||| |||| |||||||||||||||||||||||||||||| ||||||| | |||||| ||| |
|
|
| T |
8178756 |
ccagcttcaatccatacttgtttcgctgctacacatccgatgaaaacgtgccaatcattctcataattggtctcacaatgggggcagcaatccgaacaag |
8178855 |
T |
|
| Q |
121 |
gaannnnnnnttccttgaagtctcatatatgcgaagggagtacacccctcaacaaactccatnnnnnnnctttgatccgttgaggtatgtgcagattcca |
220 |
Q |
| |
|
| | | ||||||||||||| ||| ||| || |||||||| | || |||||| ||||||||| ||||||||| || |||||||| |
|
|
| T |
8178856 |
ggaccccctat--cttgaagtctcattc--gcgtaggaagaacacccctaagcaccctccataagaaaactttgatcctttgaggtatatgaagattcca |
8178951 |
T |
|
| Q |
221 |
cattctcatccaatctcccggcattctat |
249 |
Q |
| |
|
||||||||||||||| |||| || ||||| |
|
|
| T |
8178952 |
cattctcatccaatcacccgacactctat |
8178980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University