View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14138_low_53 (Length: 250)

Name: NF14138_low_53
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14138_low_53
NF14138_low_53
[»] chr6 (23 HSPs)
chr6 (7-250)||(14566087-14566330)
chr6 (30-250)||(19980616-19980837)
chr6 (12-250)||(16308134-16308374)
chr6 (12-250)||(19724893-19725129)
chr6 (86-240)||(14894268-14894422)
chr6 (123-247)||(19969228-19969350)
chr6 (94-240)||(23293757-23293903)
chr6 (108-234)||(13562691-13562817)
chr6 (90-250)||(10975379-10975538)
chr6 (95-250)||(18557877-18558030)
chr6 (126-250)||(17925161-17925284)
chr6 (122-233)||(12347024-12347135)
chr6 (91-220)||(18028051-18028180)
chr6 (114-234)||(19976802-19976922)
chr6 (91-178)||(9521132-9521219)
chr6 (168-230)||(23301095-23301157)
chr6 (163-250)||(5484309-5484396)
chr6 (91-230)||(23300032-23300171)
chr6 (171-219)||(9521524-9521572)
chr6 (168-224)||(14355583-14355639)
chr6 (180-250)||(22546427-22546496)
chr6 (188-248)||(14672074-14672134)
chr6 (167-230)||(17755551-17755614)
[»] chr1 (15 HSPs)
chr1 (17-250)||(21218836-21219068)
chr1 (7-250)||(21720643-21720883)
chr1 (89-250)||(21423751-21423909)
chr1 (108-250)||(24243770-24243911)
chr1 (12-200)||(23475388-23475575)
chr1 (89-250)||(21981287-21981446)
chr1 (103-250)||(21402911-21403055)
chr1 (140-250)||(13222216-13222325)
chr1 (95-176)||(18621474-18621555)
chr1 (97-250)||(21979078-21979228)
chr1 (122-233)||(22615675-22615785)
chr1 (91-176)||(20408487-20408572)
chr1 (91-224)||(21682135-21682274)
chr1 (186-248)||(18621419-18621481)
chr1 (186-248)||(20408565-20408627)
[»] scaffold0014 (1 HSPs)
scaffold0014 (12-250)||(202398-202635)
[»] chr7 (13 HSPs)
chr7 (17-250)||(3169753-3169985)
chr7 (91-234)||(11773532-11773675)
chr7 (7-250)||(8323475-8323718)
chr7 (12-242)||(8326683-8326912)
chr7 (12-152)||(20910109-20910249)
chr7 (12-178)||(13761276-13761441)
chr7 (12-206)||(26007155-26007349)
chr7 (126-250)||(29740726-29740849)
chr7 (114-225)||(13146390-13146501)
chr7 (127-242)||(13452040-13452154)
chr7 (168-217)||(20149185-20149234)
chr7 (168-230)||(13552343-13552405)
chr7 (184-230)||(16197543-16197589)
[»] chr8 (11 HSPs)
chr8 (12-248)||(18830152-18830387)
chr8 (7-248)||(23241631-23241866)
chr8 (91-230)||(23539815-23539954)
chr8 (89-250)||(20496377-20496536)
chr8 (95-250)||(24625350-24625504)
chr8 (95-193)||(16090870-16090967)
chr8 (178-250)||(17610222-17610294)
chr8 (188-250)||(18829066-18829127)
chr8 (180-230)||(22853293-22853343)
chr8 (7-64)||(14393333-14393390)
chr8 (170-230)||(23811234-23811294)
[»] chr3 (25 HSPs)
chr3 (12-250)||(5347797-5348032)
chr3 (7-173)||(10934878-10935042)
chr3 (91-250)||(16218454-16218612)
chr3 (108-250)||(25680315-25680457)
chr3 (108-250)||(25688619-25688761)
chr3 (86-250)||(13440592-13440756)
chr3 (92-250)||(2546589-2546747)
chr3 (128-250)||(1276495-1276618)
chr3 (91-222)||(15540469-15540600)
chr3 (7-250)||(10726486-10726716)
chr3 (91-230)||(19659363-19659502)
chr3 (12-250)||(12695695-12695923)
chr3 (17-250)||(4814281-4814512)
chr3 (95-248)||(12252278-12252428)
chr3 (179-250)||(27052975-27053045)
chr3 (95-250)||(11832470-11832622)
chr3 (91-230)||(19631456-19631595)
chr3 (7-120)||(27052838-27052950)
chr3 (167-250)||(11677318-11677400)
chr3 (95-224)||(30098309-30098437)
chr3 (91-230)||(19614867-19615006)
chr3 (188-250)||(4657291-4657353)
chr3 (91-153)||(14860857-14860919)
chr3 (17-67)||(15044879-15044929)
chr3 (216-250)||(30104447-30104481)
[»] chr5 (13 HSPs)
chr5 (17-250)||(24194627-24194857)
chr5 (7-246)||(17169971-17170208)
chr5 (91-250)||(10176215-10176372)
chr5 (12-240)||(19315932-19316159)
chr5 (91-230)||(26728199-26728337)
chr5 (92-230)||(17364562-17364699)
chr5 (169-249)||(22827125-22827205)
chr5 (188-250)||(20726524-20726585)
chr5 (180-230)||(25243231-25243281)
chr5 (180-230)||(25307383-25307433)
chr5 (95-153)||(31480027-31480084)
chr5 (91-220)||(20728200-20728329)
chr5 (169-220)||(19858974-19859025)
[»] scaffold0004 (1 HSPs)
scaffold0004 (7-250)||(370834-371076)
[»] chr4 (15 HSPs)
chr4 (7-243)||(16571585-16571820)
chr4 (7-250)||(15711818-15712058)
chr4 (17-234)||(11776614-11776830)
chr4 (12-250)||(21982361-21982597)
chr4 (70-203)||(15692624-15692756)
chr4 (89-250)||(28801280-28801438)
chr4 (91-230)||(9273111-9273250)
chr4 (91-230)||(19890071-19890210)
chr4 (91-230)||(17960338-17960477)
chr4 (168-230)||(19605269-19605331)
chr4 (91-230)||(9253140-9253279)
chr4 (169-229)||(6189125-6189185)
chr4 (89-248)||(9567046-9567199)
chr4 (188-250)||(9652574-9652636)
chr4 (168-226)||(9245474-9245532)
[»] chr2 (10 HSPs)
chr2 (12-250)||(28774638-28774876)
chr2 (91-250)||(21654686-21654845)
chr2 (91-234)||(27354008-27354150)
chr2 (12-250)||(20510734-20510954)
chr2 (181-250)||(19901864-19901933)
chr2 (123-250)||(19285083-19285210)
chr2 (95-249)||(18995727-18995880)
chr2 (135-225)||(34896290-34896380)
chr2 (180-230)||(29744254-29744304)
chr2 (94-230)||(21909630-21909765)
[»] scaffold0039 (1 HSPs)
scaffold0039 (17-250)||(8273-8506)
[»] scaffold0228 (3 HSPs)
scaffold0228 (89-242)||(6522-6674)
scaffold0228 (89-242)||(14104-14256)
scaffold0228 (89-242)||(24056-24208)
[»] scaffold0185 (1 HSPs)
scaffold0185 (74-234)||(733-892)
[»] scaffold0007 (1 HSPs)
scaffold0007 (91-230)||(204313-204451)
[»] scaffold0964 (1 HSPs)
scaffold0964 (95-250)||(2653-2808)
[»] scaffold0417 (1 HSPs)
scaffold0417 (91-250)||(4101-4259)
[»] scaffold0959 (1 HSPs)
scaffold0959 (93-230)||(2136-2273)
[»] scaffold0018 (1 HSPs)
scaffold0018 (7-243)||(61494-61728)
[»] scaffold0040 (1 HSPs)
scaffold0040 (91-250)||(42559-42724)
[»] scaffold0193 (1 HSPs)
scaffold0193 (89-250)||(19386-19545)
[»] scaffold1114 (1 HSPs)
scaffold1114 (168-230)||(2517-2579)
[»] scaffold0196 (1 HSPs)
scaffold0196 (95-229)||(17918-18051)
[»] scaffold0753 (1 HSPs)
scaffold0753 (93-230)||(1482-1619)
[»] scaffold0111 (2 HSPs)
scaffold0111 (91-224)||(29741-29874)
scaffold0111 (188-250)||(25117-25179)
[»] scaffold0412 (1 HSPs)
scaffold0412 (163-250)||(3771-3859)
[»] scaffold0416 (1 HSPs)
scaffold0416 (92-230)||(15343-15481)
[»] scaffold0001 (1 HSPs)
scaffold0001 (168-230)||(155392-155454)
[»] scaffold0186 (1 HSPs)
scaffold0186 (180-225)||(19634-19679)


Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 23)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 14566330 - 14566087
Alignment:
Q  7 gtgagatgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatgg 106  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  14566330 gtgaaatgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaaatccctaattgtcttaatgg 14566231  T
Q  107 actcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcatta 206  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  14566230 actcaatattcttaccaactaattcaccaaagttactacacacttaagtcgtcaacataatgaataattatcgtctctaaataattaccccaactcacta 14566131  T
Q  207 gttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    |||||||||||||||||||||||| |||||||||||||||||||    
T  14566130 gttacttagtaaaaataattattctcacctaaaacactaaaaat 14566087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 30 - 250
Target Start/End: Original strand, 19980616 - 19980837
Alignment:
Q  30 tgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactcaatattcttagcaactaat 129  Q
    |||||||||||||||||||||||||| ||| |||| ||| |||||||||||| ||| ||| |||||||||||||||| ||||| | ||||| ||||||||    
T  19980616 tgacctaattttctcacaagtgtagtatttttatactctccacataattgggttta-gtctctaattgtcttaatgggctcaacactcttaccaactaat 19980714  T
Q  130 tcaccaaagttactac--acacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaataa-tt 226  Q
    ||||||| ||||||||  ||||||||| | |||| |||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||    
T  19980715 tcaccaa-gttactacgtacacttaaaccatcaaaataacgaataattatcgtctctaaataattacctcaactcattagtaacttagtaaaaataattt 19980813  T
Q  227 attcccacctaaaacactaaaaat 250  Q
    | || ||| |||||||| ||||||    
T  19980814 actctcacttaaaacaccaaaaat 19980837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 16308374 - 16308134
Alignment:
Q  12 atgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactca 111  Q
    |||| |||||||||||| ||||||||||||||||||||| | |||||| |||| ||| |||||||||||| ||| ||| |||||||||||||||| ||||    
T  16308374 atgagtgaatgaatgtaatgacctaattttctcacaagtattgtgtttatatactctccacataattgggatta-gtctctaattgtcttaatgggctca 16308276  T
Q  112 atattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttac 211  Q
    ||||||||| |||||||||||||||| ||||||||| || |||  ||||| |||| ||||||| | ||||| ||||||| || || |||||| |||| ||    
T  16308275 atattcttaccaactaattcaccaaatttactacacgctgaaactgtcaaaataacgaataatcaccgtctttaaataaata-cctaactcactagtaac 16308177  T
Q  212 ttagtaaaaat----aattattcccacctaaaacactaaaaat 250  Q
    |||||||||||    ||| |||||||| |||||||||||||||    
T  16308176 ttagtaaaaataatcaatcattcccacttaaaacactaaaaat 16308134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 19725129 - 19724893
Alignment:
Q  12 atgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataat-ctacacataattgggcttaagtccctaattgtcttaatggactc 110  Q
    |||| |||||||||||| |||||||||||||||| |||  |||||||| ||||   ||||    || ||||| ||| || ||| |||||||||||| |||    
T  19725129 atgagtgaatgaatgtaatgacctaattttctcataagactagtgtttatatagcactacc---aaatgggcctaa-tctctagttgtcttaatgggctc 19725034  T
Q  111 aatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctct-aaataattaccccaactcattagtt 209  Q
    |||||| ||| ||||||||||||||||||||||||||||||||| |||||| ||||  |||||||| ||||||| |||||||||||||||| || ||||     
T  19725033 aatattgttaccaactaattcaccaaagttactacacacttaaaccgtcaaaataaaaaataattaccgtctctaaaataattaccccaacccactagta 19724934  T
Q  210 acttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  19724933 acttagtaaaaataattattcccacttaaaacaataaaaat 19724893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 86 - 240
Target Start/End: Original strand, 14894268 - 14894422
Alignment:
Q  86 agtccctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctcta 185  Q
    |||| ||| |||||||||||| || ||||||| || |||||||||||||||| |||||||||| | ||| |||||| || | ||||||||| ||||||||    
T  14894268 agtctctagttgtcttaatgggctgaatattcctatcaactaattcaccaaaattactacacaatcaaaccgtcaaaatgacgaataattaacgtctcta 14894367  T
Q  186 aataattaccccaactcattagttacttagtaaaaataattattcccacctaaaa 240  Q
    ||||||||  ||| |||| |||| |||||||||||||||| |||||||| |||||    
T  14894368 aataattattccatctcactagtaacttagtaaaaataatcattcccacttaaaa 14894422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 123 - 247
Target Start/End: Complemental strand, 19969350 - 19969228
Alignment:
Q  123 aactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaat 222  Q
    |||||||||||||| |||||||| |||||||| | |||| |||   |||||| | |||||||||||||||||||||||||| |||| |||||||||||||    
T  19969350 aactaattcaccaa-gttactactcacttaaaccttcaaaataca-aataatcaccgtctctaaataattaccccaactcactagtaacttagtaaaaat 19969253  T
Q  223 aattattcccacctaaaacactaaa 247  Q
    |||||||||||| ||||||||||||    
T  19969252 aattattcccacttaaaacactaaa 19969228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 240
Target Start/End: Complemental strand, 23293903 - 23293757
Alignment:
Q  94 attgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataatta 193  Q
    |||||| |||||| ||||| ||  ||| |||||||||  | ||||||||||| |||||||| |||||| |||  ||||||||||| ||||||||||||||    
T  23293903 attgtcataatgggctcaacatctttaccaactaattttcaaaagttactactcacttaaaccgtcaaaataccgaataattatcatctctaaataatta 23293804  T
Q  194 ccccaactcattagttacttagtaaaaataattattcccacctaaaa 240  Q
    | |||||||| |||| ||||||||||||||| ||||| |||| ||||    
T  23293803 ctccaactcactagtaacttagtaaaaataactattctcaccaaaaa 23293757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 108 - 234
Target Start/End: Complemental strand, 13562817 - 13562691
Alignment:
Q  108 ctcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattag 207  Q
    ||||||||||||| |||||||||||||||| | ||| | ||||||||  | ||| ||||| |||||||| ||| |||||||||||||||||||| | | |    
T  13562817 ctcaatattcttaccaactaattcaccaaaatcacttctcacttaaactgccaaaataataaataattaccgtttctaaataattaccccaacttaattg 13562718  T
Q  208 ttacttagtaaaaataattattcccac 234  Q
    | ||||||||||||| |||||||||||    
T  13562717 taacttagtaaaaattattattcccac 13562691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 90 - 250
Target Start/End: Original strand, 10975379 - 10975538
Alignment:
Q  90 cctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaata 189  Q
    |||| ||||||||||||  |||||||| |||  |||||| ||||  | ||||||||||||||||| |||| | |||| ||||| |||  |||||||||||    
T  10975379 cctagttgtcttaatgggttcaatatttttactaactaaatcactga-gttactacacacttaaaccgtcgaaataacgaatagttactgtctctaaata 10975477  T
Q  190 attaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||||||| | ||||  ||| ||||||||||||||||||||||||| |||||  ||||||||    
T  10975478 attacccaatctcaccagtaacttagtaaaaataattattcccacttaaaattctaaaaat 10975538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 95 - 250
Target Start/End: Original strand, 18557877 - 18558030
Alignment:
Q  95 ttgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattac 194  Q
    |||||||||||| ||||||||||||| ||| ||||| ||| | |||||| | |||||||  ||| || |||| ||||| | |  |||||||| |||||||    
T  18557877 ttgtcttaatgggctcaatattcttaccaattaatttaccga-gttacttctcacttaac-cgttaaaataacgaatattcactgtctctaattaattac 18557974  T
Q  195 cccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
      ||||||| |||| ||||||||||||||||||||||||| |||||||||||||||    
T  18557975 tacaactcactagtaacttagtaaaaataattattcccacttaaaacactaaaaat 18558030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 126 - 250
Target Start/End: Complemental strand, 17925284 - 17925161
Alignment:
Q  126 taattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaataat 225  Q
    |||||| | ||| ||||||| |||||||| |||||| |||  ||||||||||| |||||||||||||||| || |||| |||| |||||||||||||||     
T  17925284 taattctcaaaacttactactcacttaaaccgtcaaaatacggaataattatcatctctaaataattacctcatctcactagtaacttagtaaaaataac 17925185  T
Q  226 tattcccacctaaaacactaaaaat 250  Q
    ||||| || ||||||||| ||||||    
T  17925184 tattctca-ctaaaacaccaaaaat 17925161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 122 - 233
Target Start/End: Complemental strand, 12347135 - 12347024
Alignment:
Q  122 caactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaa 221  Q
    ||||||||||||||| | |||| |||||||||| |||||| ||||  |||| |||| ||||||||||||||||| || |||| |||| ||||||||||||    
T  12347135 caactaattcaccaaggatacttcacacttaaaccgtcaaaataacaaatagttattgtctctaaataattacctcatctcactagtaacttagtaaaaa 12347036  T
Q  222 taattattccca 233  Q
     || ||||||||    
T  12347035 aaaatattccca 12347024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 220
Target Start/End: Complemental strand, 18028180 - 18028051
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    ||||||||| ||||||||  || ||||||| |||||||||| | ||||||||||| |||||||| | | || |||  ||||||||||| |||||||||||    
T  18028180 ctaattgtcataatggacataacattcttatcaactaattctcaaaagttactactcacttaaaccataaatataccgaataattatcatctctaaataa 18028081  T
Q  191 ttaccccaactcattagttacttagtaaaa 220  Q
    |||| | ||| || | || |||||||||||    
T  18028080 ttactcaaacccactggtaacttagtaaaa 18028051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 114 - 234
Target Start/End: Complemental strand, 19976922 - 19976802
Alignment:
Q  114 attcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttactt 213  Q
    ||||||| |||||||||  | ||||||||||| |||||| | | |||| |||| ||||||||| | | |||||||||||||||||||||| || | ||||    
T  19976922 attcttaacaactaattttcaaaagttactactcacttagaccatcaaaataacgaataattaacatttctaaataattaccccaactcactaataactt 19976823  T
Q  214 agtaaaaataattattcccac 234  Q
    | ||||| |||| ||||||||    
T  19976822 attaaaattaatcattcccac 19976802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 178
Target Start/End: Original strand, 9521132 - 9521219
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatc 178  Q
    |||||||||  ||||||||||| ||| ||| |||||||||| | |||||||||||| ||||||| |||||| ||| ||||||||||||    
T  9521132 ctaattgtcaaaatggactcaacattgttaccaactaattctcaaaagttactacatacttaaaccgtcaaaatactgaataattatc 9521219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 23301095 - 23301157
Alignment:
Q  168 gaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaataattattc 230  Q
    ||||||||| | |||||||||||||||||||||||| |||| |||||||||||||||| ||||    
T  23301095 gaataattaccatctctaaataattaccccaactcactagtaacttagtaaaaataataattc 23301157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 250
Target Start/End: Complemental strand, 5484396 - 5484309
Alignment:
Q  163 ataatgaataattatcgtctctaaat-aattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    |||| ||||| ||||||||||| | | ||||| |||||||||||||| |||||||||||||||||||| ||||| |||||| |||||||    
T  5484396 ataacgaatagttatcgtctcttatttaattatcccaactcattagtaacttagtaaaaataattattgccacc-aaaacattaaaaat 5484309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 23300032 - 23300171
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    ||||||||| |||||||||||  || ||||  |||||||||   || |||||||| |  ||||||||| || | |  ||||||||| | |||||||||||    
T  23300032 ctaattgtcataatggactcagcatccttactaactaattcttaaacgttactactctattaaatcgttaaaacaccgaataattaccatctctaaataa 23300131  T
Q  191 ttaccccaactcattagttacttagtaaaaataattattc 230  Q
    ||||||||| | | |||| |||||||||||||||| ||||    
T  23300132 ttaccccaatttactagtaacttagtaaaaataataattc 23300171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 171 - 219
Target Start/End: Original strand, 9521524 - 9521572
Alignment:
Q  171 taattatcgtctctaaataattaccccaactcattagttacttagtaaa 219  Q
    |||||||| |||||||||||||||||||||||| |||| ||||||||||    
T  9521524 taattatcatctctaaataattaccccaactcactagtaacttagtaaa 9521572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 14355583 - 14355639
Alignment:
Q  168 gaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaataa 224  Q
    ||||||||| | |||||||||||||||||||||||| |||| || ||||||||||||    
T  14355583 gaataattaccatctctaaataattaccccaactcactagtaacatagtaaaaataa 14355639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 250
Target Start/End: Original strand, 22546427 - 22546496
Alignment:
Q  180 tctctaaataattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||||||||||||||||| || ||| |||| ||||||||||||||| ||||| || ||||||||| ||||||    
T  22546427 tctctaaataattacccaaattcactagtaacttagtaaaaataaatattctca-ctaaaacaccaaaaat 22546496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 14672074 - 14672134
Alignment:
Q  188 taattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaa 248  Q
    |||||||| |||| || |||| ||||||||||||||||  ||||||| |||||||||||||    
T  14672074 taattaccacaacccactagtaacttagtaaaaataatggttcccacttaaaacactaaaa 14672134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 17755614 - 17755551
Alignment:
Q  167 tgaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaataattattc 230  Q
    |||||||||| | |||| ||||||||||  ||||| |||||| || ||||||||||||||||||    
T  17755614 tgaataattaccatctcaaaataattactgcaacttattagtaacatagtaaaaataattattc 17755551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 134; Significance: 7e-70; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 21219068 - 21218836
Alignment:
Q  17 tgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactcaatatt 116  Q
    |||||||||||| ||| |||||||||||||||| || |||||| |||| ||  |||||||||||||| ||||| ||||||||||||||| ||| ||||||    
T  21219068 tgaatgaatgtaatgatctaattttctcacaagggttgtgtttatatagtcaccacataattgggct-aagtctctaattgtcttaatgaacttaatatt 21218970  T
Q  117 cttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttacttagt 216  Q
    |||| |||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||| ||||||| |||||| |||||| || |||||| |||||||    
T  21218969 cttaccaactaattcaccaaaattactacacacttaaattgtcaaaataacgaataattaccgtctcttaataatcaccccatctgattagtaacttagt 21218870  T
Q  217 aaaaataattattcccacctaaaacactaaaaat 250  Q
    |||||||||||||||||| |||||||||||||||    
T  21218869 aaaaataattattcccacttaaaacactaaaaat 21218836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 21720643 - 21720883
Alignment:
Q  7 gtgagatgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatgg 106  Q
    |||| |||| ||||||||||||  ||||||||||||| |||||||| |||||| |||| ||  ||| |||||||||| | ||| ||||||||||||||      
T  21720643 gtgaaatgagtgaatgaatgtaaagacctaattttcttacaagtgttgtgtttatatagtcaccacgtaattgggct-aggtctctaattgtcttaatta 21720741  T
Q  107 actcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcatta 206  Q
     || |||||||||| |||||||||| || |||||||||  |||||||| || ||| |||||||||||||   |||||||| |||||||||||||||| ||    
T  21720742 gctgaatattcttaccaactaattcccctaagttactattcacttaaaccgccaaaataatgaataatttctgtctctaattaattaccccaactcacta 21720841  T
Q  207 gttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    || |||||  ||||| ||| |||||||| |||||||| ||||||    
T  21720842 gtaactta--aaaaaaaatcattcccacttaaaacaccaaaaat 21720883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 89 - 250
Target Start/End: Original strand, 21423751 - 21423909
Alignment:
Q  89 ccctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaat 188  Q
    |||||||||||||||||||||||||||| ||| |||||| |||||| | |||||||||||||||| ||||||| |||| ||||| ||| |||||||||||    
T  21423751 ccctaattgtcttaatggactcaatatttttatcaactatttcaccga-gttactacacacttaa-tcgtcaa-ataacgaatagttaccgtctctaaat 21423847  T
Q  189 aattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||||||| || |||| |||| ||||||||||| |||| | |||||| | |||||||||||||    
T  21423848 aattacctcatctcactagtaacttagtaaaattaatcactcccacttgaaacactaaaaat 21423909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 108 - 250
Target Start/End: Complemental strand, 24243911 - 24243770
Alignment:
Q  108 ctcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattag 207  Q
    ||||||| ||||| |||||||||||| || |||||| ||||||||||  || || |||| ||||||||| | ||||||||||||||||||| || | |||    
T  24243911 ctcaataatcttaccaactaattcacgaa-gttactccacacttaaactgttaaaataacgaataattaccatctctaaataattaccccatcttactag 24243813  T
Q  208 ttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    | ||||||||||||||||||||||||| |||||||||||||||    
T  24243812 taacttagtaaaaataattattcccacgtaaaacactaaaaat 24243770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 200
Target Start/End: Complemental strand, 23475575 - 23475388
Alignment:
Q  12 atgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactca 111  Q
    |||| |||||||||||| |||| ||||||||||||||   | |||||| |||| ||   |||||| |||||| ||||| ||||||||||||| |  || |    
T  23475575 atgagtgaatgaatgtaatgacttaattttctcacaaagattgtgtttatatagtcacgacataagtgggct-aagtctctaattgtcttaaagtgctga 23475477  T
Q  112 atattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaac 200  Q
    |||||||||  |||||||||||||||||||||| |||||| || || ||| |||| ||||||||| ||| ||||| |||||| ||||||    
T  23475476 atattcttacgaactaattcaccaaagttactaaacacttcaaccgccaaaataacgaataattaccgtttctaagtaattatcccaac 23475388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 250
Target Start/End: Original strand, 21981287 - 21981446
Alignment:
Q  89 ccctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaat 188  Q
    ||||| |||||||||||  |||||||||||||  | |||||||| | | ||||||||||||||||  ||| || |||| |||||||||  |||||||| |    
T  21981287 ccctagttgtcttaatgagctcaatattcttattatctaattcatcga-gttactacacacttaac-cgttaaaataacgaataattactgtctctaatt 21981384  T
Q  189 aattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    | |||||  |||||| |||| |||||||||||||||| |||||||| |||||||||||||||    
T  21981385 acttaccataactcactagtaacttagtaaaaataatcattcccacttaaaacactaaaaat 21981446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 103 - 250
Target Start/End: Original strand, 21402911 - 21403055
Alignment:
Q  103 atggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactc 202  Q
    |||| ||||||||||||| ||||||||||| ||| |||||||||||| |||| |||||| |||||||||  ||||  ||||||||| ||||| |||  ||    
T  21402911 atgggctcaatattcttaccaactaattcatcaa-gttactacacacctaaaccgtcaaaataatgaat--ttattctctctaaatgattactccatgtc 21403007  T
Q  203 attagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    | || | |||||||||||||||| | |||||| |||||||||||||||    
T  21403008 actactaacttagtaaaaataatcactcccacttaaaacactaaaaat 21403055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 140 - 250
Target Start/End: Complemental strand, 13222325 - 13222216
Alignment:
Q  140 tactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaataattattcccacctaaa 239  Q
    |||||| |||||||| ||| || |||  ||||||||||| |||| |||||||||||| |||| | |||| |||||||||||||||||||||||| |||||    
T  13222325 tactactcacttaaaccgttaaaataccgaataattatcatctcaaaataattacccaaacttactagtaacttagtaaaaataattattccca-ctaaa 13222227  T
Q  240 acactaaaaat 250  Q
    |||| ||||||    
T  13222226 acaccaaaaat 13222216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 176
Target Start/End: Complemental strand, 18621555 - 18621474
Alignment:
Q  95 ttgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataatta 176  Q
    |||||||||||| ||||| ||||||| ||||||||||||||| |||||||||||||||||  ||||| |||| |||||||||    
T  18621555 ttgtcttaatgggctcaacattcttaccaactaattcaccaaggttactacacacttaaactgtcaaaataacgaataatta 18621474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 97 - 250
Target Start/End: Original strand, 21979078 - 21979228
Alignment:
Q  97 gtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccc 196  Q
    |||||||||| |||||||||||||  | |||||||||| | |||||| |||||||||  ||| || ||||  |||||||| ||||| ||| || |||||     
T  21979078 gtcttaatgggctcaatattcttactatctaattcaccga-gttactgcacacttaac-cgttaaaataacaaataattaccgtctataattacttacca 21979175  T
Q  197 caactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||| ||| |||| |||||||||||||||| |||||||| |||||||||||||||    
T  21979176 caa-tcactagtaacttagtaaaaataatcattcccacttaaaacactaaaaat 21979228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 233
Target Start/End: Original strand, 22615675 - 22615785
Alignment:
Q  122 caactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaa 221  Q
    |||||||||| | ||||||| ||| || |||||  ||||| |||||||||| ||| ||||||||||||||| |||||||||| | ||  |||||||||||    
T  22615675 caactaattctcaaaagttattactcatttaaactgtcaa-ataatgaatagttaccgtctctaaataatttccccaactcactggtagcttagtaaaaa 22615773  T
Q  222 taattattccca 233  Q
    ||||||||||||    
T  22615774 taattattccca 22615785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 91 - 176
Target Start/End: Original strand, 20408487 - 20408572
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataatta 176  Q
    ||||||||||||||||  |||||||||||| |||||||||||||||||||||||| ||||| || ||| || |||  |||||||||    
T  20408487 ctaattgtcttaatgggatcaatattcttaccaactaattcaccaaagttactactcactttaaccgttaaaataccgaataatta 20408572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 91 - 224
Target Start/End: Original strand, 21682135 - 21682274
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    |||||||||||||||   |||||||||||| ||||||||||| |||||||||||| ||||||||| || || | |   |||| ||| ||| |||||||||    
T  21682135 ctaattgtcttaatgagatcaatattcttaccaactaattcatcaaagttactactcacttaaattgttaaaacaccaaatatttaccgtatctaaataa 21682234  T
Q  191 tta------ccccaactcattagttacttagtaaaaataa 224  Q
    |||      |||||||||| |||| |||||||||||||||    
T  21682235 ttaccccacccccaactcactagtaacttagtaaaaataa 21682274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 18621481 - 18621419
Alignment:
Q  186 aataattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaa 248  Q
    ||||||||||||| |||| ||||  ||||||||||| |||||||||||| |||||||||||||    
T  18621481 aataattaccccatctcactagtatcttagtaaaaagaattattcccacttaaaacactaaaa 18621419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 248
Target Start/End: Original strand, 20408565 - 20408627
Alignment:
Q  186 aataattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaa 248  Q
    |||||||||||||||||  |||| ||||||||||| ||||||||| |||  ||||||| ||||    
T  20408565 aataattaccccaactcgctagtaacttagtaaaagtaattattctcactaaaaacaccaaaa 20408627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 202635 - 202398
Alignment:
Q  12 atgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactca 111  Q
    |||| ||||||||| || ||||||||||||||||||||  |||||||| |||  ||   ||| || || ||||| ||| ||| ||||||||||||||| |    
T  202635 atgagtgaatgaatttaatgacctaattttctcacaagactagtgtttatattgtcactacacaaatgagctta-gtctctagttgtcttaatggactaa 202537  T
Q  112 atattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||| ||||| ||||||||||||||| |||| |||| |     
T  202536 atattcttagcaactaattcaccaaagttactacacacttaaaccgtcaaaataataaataattaccgtctttaaataattaccccatctcactagtaaa 202437  T
Q  212 ttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||||| | ||||||||||||||| |||||||||||||||    
T  202436 ttagtcagaataattattcccacataaaacactaaaaat 202398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 3169985 - 3169753
Alignment:
Q  17 tgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactcaatatt 116  Q
    |||| ||||||| |||||||||||||||||||| || |||||| |||| ||  |||||||||||| | | ||| |||||||| |||| || |||||||||    
T  3169985 tgaaggaatgtaatgacctaattttctcacaagggttgtgtttatatagtcaccacataattggg-tcaggtctctaattgttttaacgggctcaatatt 3169887  T
Q  117 cttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttacttagt 216  Q
    ||||||||||| ||| ||||||||||||||||||||||  ||||| |||| ||||||| | ||||||||||||||||||||| || | |||| |||||||    
T  3169886 cttagcaactagttctccaaagttactacacacttaaactgtcaaaataacgaataatcaccgtctctaaataattaccccatcttactagtaacttagt 3169787  T
Q  217 aaaaataattattcccacctaaaacactaaaaat 250  Q
    |||||||||||||||||  |||||||| ||||||    
T  3169786 aaaaataattattcccaattaaaacaccaaaaat 3169753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 91 - 234
Target Start/End: Complemental strand, 11773675 - 11773532
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    ||||||||| |||||| ||||||||||||| |||||||||||||||||||||||| |||||||| ||| || |||  |||||||||  ||||||||||||    
T  11773675 ctaattgtcataatgggctcaatattcttaccaactaattcaccaaagttactactcacttaaaccgttaaaatatcgaataattactgtctctaaataa 11773576  T
Q  191 ttaccccaactcattagttacttagtaaaaataattattcccac 234  Q
    |||| |||||||| |||| ||||||||||||||| |||||||||    
T  11773575 ttactccaactcactagtaacttagtaaaaataactattcccac 11773532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 8323718 - 8323475
Alignment:
Q  7 gtgagatgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatgg 106  Q
    |||| |||| ||||||||||||  ||||||||||||||||||||||  |||||  ||| ||   ||||||||||||| | ||| |||||||||||||| |    
T  8323718 gtgaaatgagtgaatgaatgtaaagacctaattttctcacaagtgttatgtttaaatagtcactacataattgggct-aggtctctaattgtcttaatag 8323620  T
Q  107 actcaatattcttagcaactaattcaccaaagttacta-cacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcatt 205  Q
      ||||||||||||  || |||||| | || ||||||| | |||||| | |||||| ||||||||| |||| |||| ||||||||||||| ||||||| |    
T  8323619 gttcaatattcttactaattaattcgctaaggttactaactcacttataccgtcaaaataatgaatgattaccgtcactaaataattacctcaactcact 8323520  T
Q  206 agttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||| |||||| ||||||||| |||||||| |||||||| ||||||    
T  8323519 agtaacttagaaaaaataatcattcccacttaaaacaccaaaaat 8323475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 242
Target Start/End: Complemental strand, 8326912 - 8326683
Alignment:
Q  12 atgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactca 111  Q
    |||| ||||||||||||   |||||||||||||||||||||  |||||  ||| ||   ||||||||||||| | ||| |||||||||||||| |  |||    
T  8326912 atgagtgaatgaatgtaaatacctaattttctcacaagtgttatgtttaaatagtcactacataattgggct-aggtctctaattgtcttaataggttca 8326814  T
Q  112 atattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttac 211  Q
    |||||||||  ||||||||| | || |||||||| |||||| | |||||| |||| |||| |||| |||| ||||||||||||| ||||||| |||| ||    
T  8326813 atattcttactaactaattcgctaaggttactactcacttataccgtcaaaataacgaatgattaccgtcactaaataattacctcaactcactagtaac 8326714  T
Q  212 ttagtaaaaataattattcccacctaaaaca 242  Q
    |||| ||||||||| |||||||| |||||||    
T  8326713 ttaggaaaaataatcattcccacttaaaaca 8326683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 12 - 152
Target Start/End: Complemental strand, 20910249 - 20910109
Alignment:
Q  12 atgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactca 111  Q
    |||| |||||||||||  ||||||||||| |||||||| || |||||| |||| ||  | ||||| |||||||||||| ||| |||||||||||||||||    
T  20910249 atgagtgaatgaatgtgatgacctaatttcctcacaagggttgtgtttatatagtcaccgcataaatgggcttaagtctctagttgtcttaatggactca 20910150  T
Q  112 atattcttagcaactaattcaccaaagttactacacactta 152  Q
    ||||||||| |||||||||| ||||||||||||||||||||    
T  20910149 atattcttaccaactaattccccaaagttactacacactta 20910109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 178
Target Start/End: Complemental strand, 13761441 - 13761276
Alignment:
Q  12 atgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactca 111  Q
    |||| |||||||||||| || |||||||||||||||||  |||| ||| |||| ||   |||||| ||||||||| || ||| |||||||||||| ||||    
T  13761441 atgagtgaatgaatgtaatggcctaattttctcacaagactagtatttatatagtcactacataaatgggcttaa-tctctagttgtcttaatgggctca 13761343  T
Q  112 atattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatc 178  Q
    ||||| ||| ||||||| |||||||||||||||||||| |||| |||||| ||||||||||||||||    
T  13761342 atatttttaccaactaagtcaccaaagttactacacacctaaaacgtcaaaataatgaataattatc 13761276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 12 - 206
Target Start/End: Complemental strand, 26007349 - 26007155
Alignment:
Q  12 atgaatgaatgaatgtagtgacctaattttctcacaag-tgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactc 110  Q
    |||| |||||||||||| ||| |||||||||||||||| | || ||||  |||| ||  |||||||||||  ||||||| ||||| |||||||||  |||    
T  26007349 atgagtgaatgaatgtaatgatctaattttctcacaaggtcta-tgttcatatagtcaccacataattgga-ttaagtctctaatggtcttaatgcgctc 26007252  T
Q  111 aatattcttagcaactaattcaccaaagttactacacacttaaatcgtc-aacataatgaataattatcgtctctaaataattaccccaactcatta 206  Q
    |||||||||| |||||||||||| ||||||||||||||||||||  ||| || |||| ||||||||| |||||||||||||||||||| ||| ||||    
T  26007251 aatattcttaccaactaattcactaaagttactacacacttaaaaagtcaaaaataacgaataattaccgtctctaaataattacccctacttatta 26007155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 126 - 250
Target Start/End: Complemental strand, 29740849 - 29740726
Alignment:
Q  126 taattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaataat 225  Q
    ||||||||||||||||||||||||||||| |||||| || ||||||||||| ||||||||| |||||| | ||||||| |||| |||| || ||||||||    
T  29740849 taattcaccaaagttactacacacttaaaccgtcaaaatgatgaataattaccgtctctaattaattatctcaactcactagtaacttggt-aaaataat 29740751  T
Q  226 tattcccacctaaaacactaaaaat 250  Q
    ||||| ||| |||||||||||||||    
T  29740750 tattctcacttaaaacactaaaaat 29740726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 13146390 - 13146501
Alignment:
Q  114 attcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttactt 213  Q
    |||||||| ||||||||| | ||||||||||| |||||||| ||| || | | |||||||||| | ||||||||||||||| | || ||| |||| ||||    
T  13146390 attcttagtaactaattctcaaaagttactactcacttaaaccgttaaaacactgaataattaccatctctaaataattactcaaaatcactagtaactt 13146489  T
Q  214 agtaaaaataat 225  Q
    ||||||||||||    
T  13146490 agtaaaaataat 13146501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 127 - 242
Target Start/End: Complemental strand, 13452154 - 13452040
Alignment:
Q  127 aattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaataatt 226  Q
    |||||||||||||||||||||||||||| | |||| |||| || |||||| |||||||||| ||||| | ||  ||| |||| |||| |||||||| |||    
T  13452154 aattcaccaaagttactacacacttaaaccatcaaaataacgactaattaccgtctctaaacaattatctcatgtcactagtaactttgtaaaaat-att 13452056  T
Q  227 attcccacctaaaaca 242  Q
    |||||||| |||||||    
T  13452055 attcccacttaaaaca 13452040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 168 - 217
Target Start/End: Original strand, 20149185 - 20149234
Alignment:
Q  168 gaataattatcgtctctaaataattaccccaactcattagttacttagta 217  Q
    ||||||||||| ||||||||||||||||||||||||| ||| ||||||||    
T  20149185 gaataattatcatctctaaataattaccccaactcatgagtaacttagta 20149234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 13552343 - 13552405
Alignment:
Q  168 gaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaataattattc 230  Q
    ||||||||| | |||| ||||||||||| ||||||| |||| ||||||||||||||| |||||    
T  13552343 gaataattaccatctcgaaataattacctcaactcagtagtaacttagtaaaaataactattc 13552405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 16197543 - 16197589
Alignment:
Q  184 taaataattaccccaactcattagttacttagtaaaaataattattc 230  Q
    |||||||||||| ||||||| |||| ||||||||||||||| |||||    
T  16197543 taaataattacctcaactcactagtaacttagtaaaaataactattc 16197589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 12 - 248
Target Start/End: Complemental strand, 18830387 - 18830152
Alignment:
Q  12 atgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactca 111  Q
    |||| |||||||||||| |||||||||||||||| ||   |||||||| |||| ||   | | || ||| |||| ||| ||| |||||||||||| ||||    
T  18830387 atgagtgaatgaatgtaatgacctaattttctcataatactagtgtttatatagtcactaaaaaaatggactta-gtctctagttgtcttaatgggctca 18830289  T
Q  112 atattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttac 211  Q
    ||||||||| |||||| |||||||||||||||||||||||||| |||||| |||| |||||||||  |||||||||||||||||||| |||| |||| ||    
T  18830288 atattcttatcaactatttcaccaaagttactacacacttaaaccgtcaaaataacgaataattactgtctctaaataattaccccatctcactagtaac 18830189  T
Q  212 ttagtaaaaataattattcccacctaaaacactaaaa 248  Q
    ||||||||||||||||||||||| ||||||| |||||    
T  18830188 ttagtaaaaataattattcccacttaaaacagtaaaa 18830152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 7 - 248
Target Start/End: Complemental strand, 23241866 - 23241631
Alignment:
Q  7 gtgagatgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatgg 106  Q
    |||| |||| |||||||||||| |||||||||||||||||||||||     || |||| | | |||||||||||||||   || ||| |||| |||||||    
T  23241866 gtgaaatgagtgaatgaatgtaatgacctaattttctcacaagtgt-----ttatatactatccacataattgggctttt-tctctatttgttttaatgg 23241773  T
Q  107 actcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcatta 206  Q
     ||||| ||||||| |||||||||||||| ||||||||||||| |||| |||||| |||| |||| |||| |||||| ||||||||||||||||||| ||    
T  23241772 gctcaacattcttaccaactaattcaccatagttactacacacgtaaaccgtcaaaataacgaattattaccgtctccaaataattaccccaactcacta 23241673  T
Q  207 gttacttagtaaaaataattattcccacctaaaacactaaaa 248  Q
    || ||||||||||||||||||||||| | |||||||||||||    
T  23241672 gtaacttagtaaaaataattattcccccttaaaacactaaaa 23241631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 23539954 - 23539815
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    |||||||||||||||| ||||||| ||||| ||||||||||||||| |||||||| |||||||| ||| || |||  ||||||||| || ||||||||||    
T  23539954 ctaattgtcttaatgggctcaataatcttaccaactaattcaccaaggttactactcacttaaaccgttaaaataccgaataattaccgcctctaaataa 23539855  T
Q  191 ttaccccaactcattagttacttagtaaaaataattattc 230  Q
    |||| ||||||   |||| |||||||||||||||||||||    
T  23539854 ttactccaactttctagtaacttagtaaaaataattattc 23539815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 89 - 250
Target Start/End: Complemental strand, 20496536 - 20496377
Alignment:
Q  89 ccctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaat 188  Q
    ||||| |||||||||||  |||||||| ||||  |||||||||||||| ||||||||||||||||  |||||| |||| ||||||||| ||||| |||      
T  20496536 ccctagttgtcttaatgagctcaatatccttacaaactaattcaccaa-gttactacacacttaac-cgtcaaaataaggaataattaccgtctttaata 20496439  T
Q  189 aattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||||||| ||||||  |||  ||||||||||||||||||| ||||| |||||||||||||||    
T  20496438 aattaccgcaactcgctagcaacttagtaaaaataattatccccacttaaaacactaaaaat 20496377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 250
Target Start/End: Original strand, 24625350 - 24625504
Alignment:
Q  95 ttgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattac 194  Q
    |||||||||||| |||||||||| || |||||||||| || | |||||||||| |||||| | | || ||||  |||||| |  |||||||| |||||||    
T  24625350 ttgtcttaatgggctcaatattcctaccaactaattccccga-gttactacactcttaaaccattaaaataacaaataataagtgtctctaattaattac 24625448  T
Q  195 cccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    | ||||||| |||| |||||||||||||||| |||||||| |||||||||||||||    
T  24625449 cacaactcactagtaacttagtaaaaataatcattcccacgtaaaacactaaaaat 24625504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 193
Target Start/End: Complemental strand, 16090967 - 16090870
Alignment:
Q  95 ttgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataatta 193  Q
    |||||||||||||||||||||||||| ||| ||||||| | |||||||||| |||||||| |   || ||| ||||||||||  |||||||||||||||    
T  16090967 ttgtcttaatggactcaatattcttaccaattaattca-cgaagttactactcacttaaaccactaaaatactgaataattactgtctctaaataatta 16090870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 178 - 250
Target Start/End: Complemental strand, 17610294 - 17610222
Alignment:
Q  178 cgtctctaaataattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||||||||| ||||||||||| |||| | || || |||||||||||||||||||||| ||||||| |||||||    
T  17610294 cgtctctaattaattaccccatctcactggtaacgtagtaaaaataattattcccacttaaaacattaaaaat 17610222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 18829066 - 18829127
Alignment:
Q  188 taattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    |||||||||||||||| |||| ||||||||||| |||||||| ||||| ||||||||||||||    
T  18829066 taattaccccaactcactagtaacttagtaaaattaattattgccacc-aaaacactaaaaat 18829127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 22853343 - 22853293
Alignment:
Q  180 tctctaaataattaccccaactcattagttacttagtaaaaataattattc 230  Q
    ||||||||||||||| | |||||| |||| ||||||||||||||| |||||    
T  22853343 tctctaaataattactctaactcactagtaacttagtaaaaataaatattc 22853293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 64
Target Start/End: Complemental strand, 14393390 - 14393333
Alignment:
Q  7 gtgagatgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtata 64  Q
    |||| |||| ||||||| ||||  |||||||||||||||||||||| |||||| ||||    
T  14393390 gtgaaatgagtgaatgagtgtaaagacctaattttctcacaagtgttgtgtttatata 14393333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 230
Target Start/End: Original strand, 23811234 - 23811294
Alignment:
Q  170 ataattatcgtctctaaataattaccccaactcattagttacttagtaaaaataattattc 230  Q
    ||||||| ||||||||| |||||| || |||| | |||| |||||||||||||||| ||||    
T  23811234 ataattaccgtctctaattaattatccaaacttactagtaacttagtaaaaataataattc 23811294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 5347797 - 5348032
Alignment:
Q  12 atgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactca 111  Q
    |||| |||||||||||| || |||||||||||||||||  | |||||| |||| ||   |||| | || |||| |||| |||||||| ||||||| ||||    
T  5347797 atgagtgaatgaatgtaatggcctaattttctcacaagacttgtgtttatatagtcactacatgaatgagctt-agtctctaattgttttaatgggctca 5347895  T
Q  112 atattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttac 211  Q
    ||||||||| |||||||||| |||||||||||||||||||||| | |||| |||| || |||||| |||||||||||||||||| ||||||| |||| ||    
T  5347896 atattcttatcaactaattc-ccaaagttactacacacttaaaccttcaaaataacgattaattaccgtctctaaataattacctcaactcactagtaac 5347994  T
Q  212 ttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    |||||||||||||||||| |||| |||||||||||||||    
T  5347995 ttagtaaaaataattatt-ccacttaaaacactaaaaat 5348032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 173
Target Start/End: Original strand, 10934878 - 10935042
Alignment:
Q  7 gtgagatgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatgg 106  Q
    |||| |||| |||||||||||| |||||||||||| |||||||||| |||||| |||| ||| | |||||||||||||| ||| |||||||||||||||     
T  10934878 gtgaaatgagtgaatgaatgtaatgacctaatttt-tcacaagtgttgtgtttatatagtctcctcataattgggctta-gtctctaattgtcttaatgt 10934975  T
Q  107 actcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataa 173  Q
     ||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  10934976 gctcaatattcttaccaactaattcaccaaagttactacacacttaaaccgtcaaaataatgaataa 10935042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 91 - 250
Target Start/End: Complemental strand, 16218612 - 16218454
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    |||||||||||||||| ||||||||||||| ||||||||| |||||||||||||| |||||||| ||| || |||  ||||||||| |||||||||||||    
T  16218612 ctaattgtcttaatgggctcaatattcttaccaactaatttaccaaagttactactcacttaaaccgttaaaatatcgaataattaccgtctctaaataa 16218513  T
Q  191 ttaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    |||||||||||||  ||| ||||||||||||||||||||| || ||||||||| ||||||    
T  16218512 ttaccccaactcacaagtaacttagtaaaaataattattctca-ctaaaacaccaaaaat 16218454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 108 - 250
Target Start/End: Complemental strand, 25680457 - 25680315
Alignment:
Q  108 ctcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattag 207  Q
    ||||||||||||| |||||||||||| || ||||||||||||||||| |||||| ||||||||||||||   ||||||| |||||||||||||||| |||    
T  25680457 ctcaatattcttaccaactaattcacgaaggttactacacacttaaaccgtcaaaataatgaataattactatctctaattaattaccccaactcactag 25680358  T
Q  208 ttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    | ||||  ||||||||||||||||||| |||||| || |||||    
T  25680357 taacttcataaaaataattattcccacttaaaacgctcaaaat 25680315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 108 - 250
Target Start/End: Complemental strand, 25688761 - 25688619
Alignment:
Q  108 ctcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattag 207  Q
    ||||||||||||| |||||||||||| || ||||||||||||||||| |||||| ||||||||||||||   ||||||| |||||||||||||||| |||    
T  25688761 ctcaatattcttaccaactaattcacgaaggttactacacacttaaaccgtcaaaataatgaataattactatctctaattaattaccccaactcactag 25688662  T
Q  208 ttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    | ||||  ||||||||||||||||||| |||||| || |||||    
T  25688661 taacttcataaaaataattattcccacttaaaacgctcaaaat 25688619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 86 - 250
Target Start/End: Original strand, 13440592 - 13440756
Alignment:
Q  86 agtccctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctcta 185  Q
    |||| ||| |||||||||||| ||||||||||||| ||||||||| |||| ||||||||||||||||||  ||||| |||| |||||||||  |||| ||    
T  13440592 agtctctagttgtcttaatgggctcaatattcttaccaactaatttaccacagttactacacacttaaactgtcaaaataacgaataattactgtcttta 13440691  T
Q  186 aataattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    |||||||||||||||||| |||| | ||||||||||| |||||   ||| |||||||| ||||||    
T  13440692 aataattaccccaactcactagtaatttagtaaaaatgattatattcacttaaaacaccaaaaat 13440756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 92 - 250
Target Start/End: Complemental strand, 2546747 - 2546589
Alignment:
Q  92 taattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataat 191  Q
    |||||||| |||| | ||||||||||||| ||||||||||||||||||||||||  ||||||| | | || |||   |||||||| ||||||||||||||    
T  2546747 taattgtcataataggctcaatattcttaccaactaattcaccaaagttactactaacttaaacccttaaaataccaaataattaccgtctctaaataat 2546648  T
Q  192 taccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    |||||||||  | |||| |||| |||||||||||||||| |||  ||||||| ||||||    
T  2546647 taccccaacctactagtaacttggtaaaaataattattctcactcaaaacaccaaaaat 2546589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 128 - 250
Target Start/End: Original strand, 1276495 - 1276618
Alignment:
Q  128 attcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctc-taaataattaccccaactcattagttacttagtaaaaataatt 226  Q
    ||||||||||||||||||||||||||| |||||| |||| |||||||||||||||| ||||| | || | ||||||| |||| ||||||||||||||||     
T  1276495 attcaccaaagttactacacacttaaaccgtcaaaataacgaataattatcgtctcttaaattactagcacaactcactagtaacttagtaaaaataatc 1276594  T
Q  227 attcccacctaaaacactaaaaat 250  Q
    ||| || | |||||||||||||||    
T  1276595 atttccgcttaaaacactaaaaat 1276618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 222
Target Start/End: Original strand, 15540469 - 15540600
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    |||||||||||||||| || || ||||||| |||||||||| | ||||||| ||| |||||||| |||||| |||| ||||||||| | |||||||||||    
T  15540469 ctaattgtcttaatgggcttaacattcttaccaactaattctcaaaagttaatactcacttaaaccgtcaa-ataacgaataattaccatctctaaataa 15540567  T
Q  191 ttacccc-aactcattagttacttagtaaaaat 222  Q
    ||||||| |||||| |||| |||||||||||||    
T  15540568 ttaccccaaactcactagtaacttagtaaaaat 15540600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 10726486 - 10726716
Alignment:
Q  7 gtgagatgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatgg 106  Q
    |||| |||| |||||||| ||| |||||||||||||||||||| || |||||| |||| ||  ||||||| |||||| | ||| |||||||||||||||     
T  10726486 gtgaaatgagtgaatgaaggtaatgacctaattttctcacaagggttgtgtttatatagtcaccacataaatgggct-aggtctctaattgtcttaatga 10726584  T
Q  107 actcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcatta 206  Q
     ||||||||||||             |||| |||||||| ||||| ||  ||||| |||| |||||||||||||| |||| ||||||| | || ||| ||    
T  10726585 gctcaatattcttg------------ccaaggttactactcacttgaactgtcaaaataacgaataattatcgtccctaattaattactcaaattcacta 10726672  T
Q  207 gttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    || |||||||||||||||| |||| ||| |||||||| ||||||    
T  10726673 gtaacttagtaaaaataatcattctcacttaaaacacaaaaaat 10726716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 19659502 - 19659363
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    ||||||||| |||||| ||||| ||||||| |||| ||||  |  |||||||||| |||||||| |||||| ||| |||||||||| | |||||||||||    
T  19659502 ctaattgtcataatgggctcaacattcttaccaaccaattttcgtaagttactactcacttaaaccgtcaaaatactgaataattaccatctctaaataa 19659403  T
Q  191 ttaccccaactcattagttacttagtaaaaataattattc 230  Q
    ||||||||||||| |||| | ||  ||||||||| |||||    
T  19659402 ttaccccaactcactagtaatttgataaaaataactattc 19659363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 250
Target Start/End: Complemental strand, 12695923 - 12695695
Alignment:
Q  12 atgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactca 111  Q
    |||| |||||||| ||| |||||||||||||| | |||  |||||||| |||| ||   ||| || ||| || || || ||| ||||||||||||  |||    
T  12695923 atgagtgaatgaaggtaatgacctaattttcttataagactagtgtttatatagtcactacacaaatggactcaa-tctctagttgtcttaatgggttca 12695825  T
Q  112 atattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctct-aaataattaccccaactcattagtta 210  Q
    ||||||||  ||| ||||||||| |||||||||||||||||||  ||||| ||||           ||||||| ||||||||||| ||||||| || | |    
T  12695824 atattctttccaaataattcaccgaagttactacacacttaaactgtcaaaataac----------cgtctcttaaataattaccacaactcactactaa 12695735  T
Q  211 cttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||||||||||||||| |||||||| |||||||||||||||    
T  12695734 cttagtaaaaataatcattcccacttaaaacactaaaaat 12695695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 4814281 - 4814512
Alignment:
Q  17 tgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactcaatatt 116  Q
    |||||||| ||| || | ||||||||||| |||  |||||||| |||| ||   ||| || |||| ||| ||||| | |||||||||||  |||||||||    
T  4814281 tgaatgaaggtaatgccataattttctcataagactagtgtttatatagtcactacacaaatgggatta-gtcccaagttgtcttaatgagctcaatatt 4814379  T
Q  117 cttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctc-taaataattaccccaactcattagttacttag 215  Q
    |||| || |||||||| ||||| ||||||||| ||| | |||||| |||| |||||| || |||||| |||||||| ||| ||||||| |||| || ||     
T  4814380 cttaccacctaattcagcaaagctactacacatttagaccgtcaaaataacgaataactaccgtctcttaaataataaccacaactcactagtaacata- 4814478  T
Q  216 taaaaataattattcccacctaaaacactaaaaat 250  Q
      |||||||| |||||||| ||||| |||||||||    
T  4814479 -taaaataatcattcccacttaaaatactaaaaat 4814512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 248
Target Start/End: Complemental strand, 12252428 - 12252278
Alignment:
Q  95 ttgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattac 194  Q
    |||||||||||  |||||||||||||  |||| ||||||  | |||||||| ||| |||  |||||| |||| ||||||||||||| | ||| ||||||     
T  12252428 ttgtcttaatgtgctcaatattcttaataacttattcactga-gttactactcacctaac-cgtcaa-ataacgaataattatcgtatttaattaattaa 12252332  T
Q  195 cccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaa 248  Q
    | ||| ||| |||| |||||||||||||||||||| ||||||||||||||||||    
T  12252331 cacaattcactagtaacttagtaaaaataattatttccacctaaaacactaaaa 12252278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 179 - 250
Target Start/End: Original strand, 27052975 - 27053045
Alignment:
Q  179 gtctctaaataattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    |||||||| ||||||||| |||||| |||| ||||||||||||||||||||||||| |||||||||||||||    
T  27052975 gtctctaattaattaccc-aactcagtagtaacttagtaaaaataattattcccacttaaaacactaaaaat 27053045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 250
Target Start/End: Complemental strand, 11832622 - 11832470
Alignment:
Q  95 ttgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattac 194  Q
    |||||||||||  ||||||||||||   |||||||||||| | |||||||| |||||||  |||||| ||||  ||||||||  |||||||| |||||||    
T  11832622 ttgtcttaatgtgctcaatattcttgctaactaattcaccga-gttactactcacttaac-cgtcaa-ataacaaataattactgtctctaattaattac 11832526  T
Q  195 cccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
      ||||||| |  | |||||||||||||| |||||||||| |||||||| ||||||    
T  11832525 tacaactcactgttaacttagtaaaaatagttattcccacttaaaacacgaaaaat 11832470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 19631595 - 19631456
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    ||||||||  |||| | ||||| |||||||   |||||||  || |||||||||| |||||||| |||||| ||   |||| |||| | |||||||||||    
T  19631595 ctaattgtgataataggctcaacattcttacttactaattttcctaagttactactcacttaaaccgtcaaaatgccgaattattaccatctctaaataa 19631496  T
Q  191 ttaccccaactcattagttacttagtaaaaataattattc 230  Q
    ||||||||||||| |||| |||| |||||||||| |||||    
T  19631495 ttaccccaactcactagtaacttggtaaaaataactattc 19631456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 7 - 120
Target Start/End: Original strand, 27052838 - 27052950
Alignment:
Q  7 gtgagatgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatgg 106  Q
    |||| |||| |||||||||| | |||| ||||||||||||||| |  |||||| |||| ||  |||||||||| | ||||||| |||||||||||||||     
T  27052838 gtgaaatgagtgaatgaatgcaatgacataattttctcacaagggctgtgtttatatagtcaccacataattgag-ttaagtctctaattgtcttaatga 27052936  T
Q  107 actcaatattctta 120  Q
     |||||||||||||    
T  27052937 gctcaatattctta 27052950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 167 - 250
Target Start/End: Complemental strand, 11677400 - 11677318
Alignment:
Q  167 tgaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||||||||||   |||||||||||||||| ||||||| |||| ||||||||||||||| ||||| |||| ||||||| ||||||    
T  11677400 tgaataattactatctctaaataattacctcaactcactagtaacttagtaaaaataactattctcacc-aaaacaccaaaaat 11677318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 224
Target Start/End: Complemental strand, 30098437 - 30098309
Alignment:
Q  95 ttgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaaca-taatgaataattatcgtctctaaataatta 193  Q
    |||||||||||  |||||||||||||  ||||| ||||| | |||||||||||||||||  || ||| | ||||||||| | | || |||||| ||||||    
T  30098437 ttgtcttaatgagctcaatattcttactaactatttcac-agagttactacacacttaac-cgacaaaaataatgaatattcaccgcctctaattaatta 30098340  T
Q  194 ccccaactcattagttacttagtaaaaataa 224  Q
    ||||| |||| |||| |||||||||||||||    
T  30098339 ccccatctcactagtaacttagtaaaaataa 30098309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 19614867 - 19615006
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    ||||||||| |||| ||||||| || ||||  ||||||||| | | ||||||||| || |||||  || || | |  ||||||| | | ||||||| |||    
T  19614867 ctaattgtcataattgactcaacatccttactaactaattctcaatagttactactcaattaaactgttaaaacaccgaataatcaccatctctaattaa 19614966  T
Q  191 ttaccccaactcattagttacttagtaaaaataattattc 230  Q
    ||||||||||| | || | |||||||||||||||||||||    
T  19614967 ttaccccaacttactaataacttagtaaaaataattattc 19615006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 4657291 - 4657353
Alignment:
Q  188 taattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||||||||| |||||| |||| |||||||||||||| |||||  |||| |||||| |||||||    
T  4657291 taattacccaaactcactagtaacttagtaaaaatatttattgtcacccaaaacattaaaaat 4657353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 14860919 - 14860857
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaa 153  Q
    ||||||||||| ||||  |||| |||||||  ||||||||||| ||||||||||| |||||||    
T  14860919 ctaattgtcttgatgggttcaacattcttactaactaattcacaaaagttactactcacttaa 14860857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Complemental strand, 15044929 - 15044879
Alignment:
Q  17 tgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatc 67  Q
    ||||||||||||   ||||||||||||||||||||| |||||| |||||||    
T  15044929 tgaatgaatgtaaaaacctaattttctcacaagtgttgtgtttatataatc 15044879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 250
Target Start/End: Complemental strand, 30104481 - 30104447
Alignment:
Q  216 taaaaataattattcccacctaaaacactaaaaat 250  Q
    ||||||||||||||||||| |||||||||||||||    
T  30104481 taaaaataattattcccacttaaaacactaaaaat 30104447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 24194627 - 24194857
Alignment:
Q  17 tgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactcaatatt 116  Q
    ||||||||||||  |||||||||||||||||||||| |||||| |||| ||  |||||||||||| | | || |||||||||||||||||||||||||||    
T  24194627 tgaatgaatgtaaagacctaattttctcacaagtgttgtgtttatatagtcatcacataattggggt-aggttcctaattgtcttaatggactcaatatt 24194725  T
Q  117 cttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttacttagt 216  Q
    |||| |||||||||||||||  ||||||| ||| |||| |||||| |||| ||||||| | |||  ||||||||||||| ||||||| || | |||| ||    
T  24194726 cttaccaactaattcaccaagtttactactcacctaaaccgtcaa-ataacgaataatgaccgttcctaaataattacctcaactcacta-taacttggt 24194823  T
Q  217 aaaaataattattcccacctaaaacactaaaaat 250  Q
    |||||||||||||||||| |||||||| ||||||    
T  24194824 aaaaataattattcccacttaaaacaccaaaaat 24194857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 7 - 246
Target Start/End: Original strand, 17169971 - 17170208
Alignment:
Q  7 gtgagatgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatgg 106  Q
    |||| |||| ||||||||||||  ||||| |||||||||||||||| |||||| |||| ||  |||||||||||||| | ||| |||||| |||||||||    
T  17169971 gtgaaatgagtgaatgaatgtaaagacctcattttctcacaagtgttgtgtttatatagtcaccacataattgggct-aggtctctaattttcttaatgg 17170069  T
Q  107 actcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcatta 206  Q
    || ||||||| ||| ||||||||||| |||||||  ||| || ||||  |||||| |||| ||||||||||||||||||| |||||| ||||||||| ||    
T  17170070 acgcaatattgttaccaactaattcatcaaagttcttactcaattaacccgtcaa-ataacgaataattatcgtctctaattaattatcccaactcacta 17170168  T
Q  207 gttacttagtaaaaataattattcccacctaaaacactaa 246  Q
    || |||  ||||||||||| |  ||||| |||||||||||    
T  17170169 gtaactgggtaaaaataatcacacccacttaaaacactaa 17170208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 91 - 250
Target Start/End: Complemental strand, 10176372 - 10176215
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    |||||||||||||||||||| ||||| ||| ||||||||||||||| ||||||||  ||||||| ||| || |||| ||||||||  ||| |||||||||    
T  10176372 ctaattgtcttaatggactcgatatttttaccaactaattcaccaatgttactacttacttaaaccgttaa-ataaggaataattgccgtatctaaataa 10176274  T
Q  191 ttaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    |||| |||||||| |||| |||||||||||||||||||||||| ||||||||| ||||||    
T  10176273 ttactccaactcactagtaacttagtaaaaataattattccca-ctaaaacaccaaaaat 10176215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 12 - 240
Target Start/End: Complemental strand, 19316159 - 19315932
Alignment:
Q  12 atgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactca 111  Q
    |||| |||||||||||| |||| |||||||||||||||  | |||||| |||||||   ||| || ||  |||| ||| ||  |||||||||||| ||||    
T  19316159 atgagtgaatgaatgtaatgacataattttctcacaagacttgtgtttatataatcactacacaaatgaactta-gtctcttgttgtcttaatgggctca 19316061  T
Q  112 atattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctc-taaataattaccccaactcattagtta 210  Q
    ||||||| |  ||||||||||||||||||||||||||| |||| ||| || ||||  ||||||||  ||||| |||||||||  ||||||||| |||| |    
T  19316060 atattctcacaaactaattcaccaaagttactacacacataaaccgttaaaataacaaataattactgtctcttaaataatt-gcccaactcactagtaa 19315962  T
Q  211 cttagtaaaaataattattcccacctaaaa 240  Q
    ||||||||||||||| |||||||| |||||    
T  19315961 cttagtaaaaataataattcccacttaaaa 19315932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 26728199 - 26728337
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    ||||||||| |||||| || || ||||||| || ||||||| | ||| ||  ||| | |||||| |||||| |||| ||||||||||| |||||||||||    
T  26728199 ctaattgtcataatgggcttaacattcttaccacctaattctcaaaaattgttactctcttaaaccgtcaaaataacgaataattatcatctctaaataa 26728298  T
Q  191 ttaccccaactcattagttacttagtaaaaataattattc 230  Q
    |||||||||||||  ||| |||||||||| |||| |||||    
T  26728299 ttaccccaactca-cagtaacttagtaaatataactattc 26728337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 92 - 230
Target Start/End: Original strand, 17364562 - 17364699
Alignment:
Q  92 taattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataat 191  Q
    |||||||| |||||| ||||| |||||||  ||||||||| | ||| ||||||| |||||||| |||||| | |  ||||||||| | ||| ||||||||    
T  17364562 taattgtcataatgggctcaacattcttactaactaattcccaaaacttactactcacttaaaccgtcaaaacaccgaataattaccctctataaataat 17364661  T
Q  192 taccccaactcattagttacttagtaaaaataattattc 230  Q
    || || |||||| |||| |||||| ||||||||||||||    
T  17364662 tatcc-aactcactagtaacttagcaaaaataattattc 17364699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 249
Target Start/End: Complemental strand, 22827205 - 22827125
Alignment:
Q  169 aataattatcgtctctaaataattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaa 249  Q
    |||||||||||||||||| |||||||  ||  |||||| | |||||||| ||||||| |||||||| |||||| |||||||    
T  22827205 aataattatcgtctctaattaattacttcatgtcattaataacttagtacaaataatcattcccacttaaaacgctaaaaa 22827125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 20726585 - 20726524
Alignment:
Q  188 taattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    |||||| ||||||||  |||| |||||||||||||||||||| ||||| ||||||||||||||    
T  20726585 taattatcccaactccctagtaacttagtaaaaataattattgccacc-aaaacactaaaaat 20726524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 25243281 - 25243231
Alignment:
Q  180 tctctaaataattaccccaactcattagttacttagtaaaaataattattc 230  Q
    |||||||||||||||| ||||||| |||| | |||||||||||||||||||    
T  25243281 tctctaaataattacctcaactcactagtaatttagtaaaaataattattc 25243231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 25307433 - 25307383
Alignment:
Q  180 tctctaaataattaccccaactcattagttacttagtaaaaataattattc 230  Q
    |||||||||||||||| ||||||| |||| | |||||||||||||||||||    
T  25307433 tctctaaataattacctcaactcactagtaatttagtaaaaataattattc 25307383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 31480027 - 31480084
Alignment:
Q  95 ttgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaa 153  Q
    |||||||||||| ||||||||||||| |||||||||||||  |||||||||||| ||||    
T  31480027 ttgtcttaatgggctcaatattcttaccaactaattcacc-gagttactacacatttaa 31480084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 91 - 220
Target Start/End: Original strand, 20728200 - 20728329
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    ||||||||| ||||| |||||| |||||||  ||||||||| | ||||||||||| |||||||| |    | |||  ||||||||  | |||| ||||||    
T  20728200 ctaattgtcataatgaactcaacattcttactaactaattctcaaaagttactactcacttaaaccactgaaatagcgaataatttccatctcgaaataa 20728299  T
Q  191 ttaccccaactcattagttacttagtaaaa 220  Q
    ||||||||||  | |||| |||||||||||    
T  20728300 ttaccccaaccaactagtaacttagtaaaa 20728329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 19859025 - 19858974
Alignment:
Q  169 aataattatcgtctctaaataattaccccaactcattagttacttagtaaaa 220  Q
    |||||||||| | | ||||||||||||||||| ||||||| |||||||||||    
T  19859025 aataattatcatatttaaataattaccccaacacattagtaacttagtaaaa 19858974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 371076 - 370834
Alignment:
Q  7 gtgagatgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatgg 106  Q
    |||| |||| |||||||||||| |||||||||||||||||||| || |||||| |||| ||   | |||| |||||||| | | ||| |||||||||||     
T  371076 gtgaaatgagtgaatgaatgtaatgacctaattttctcacaag-gttgtgtttatatagtcactaaataaatgggctta-gcctctagttgtcttaatga 370979  T
Q  107 actcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtct-ctaaataattaccccaactcatt 205  Q
      |||||||||||| |||||||||||||||||||||||||||| |||| |||||| |||| ||||||||| ||||| |||||||||||||| |||||| |    
T  370978 gttcaatattcttaccaactaattcaccaaagttactacacacataaaccgtcaaaataacgaataattaccgtctcctaaataattaccctaactcact 370879  T
Q  206 agttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||  |||||||||||||||| |||||||| |||||||| ||||||    
T  370878 aggaacttagtaaaaataatcattcccacataaaacacgaaaaat 370834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 2e-48; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 16571585 - 16571820
Alignment:
Q  7 gtgagatgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatgg 106  Q
    |||| |||| |||||||||||| |||||||||||||||||||| || |||||| |||| ||  ||||||||||||| || ||| |||||||||||||| |    
T  16571585 gtgaaatgagtgaatgaatgtaatgacctaattttctcacaagagttgtgtttatatagtcaccacataattgggc-taggtctctaattgtcttaattg 16571683  T
Q  107 actcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctct-aaataattaccccaactcatt 205  Q
     |||| |||||||| |||||||||||||||| || |||| ||||||||  ||||| ||||  |||||||| ||||| | |||||||||||| |||||| |    
T  16571684 -ctcagtattcttaccaactaattcaccaaaatttctactcacttaaactgtcaaaataacaaataattaccgtctataaaataattaccctaactcact 16571782  T
Q  206 agttacttagtaaaaataattattcccacctaaaacac 243  Q
    ||| |||| |||||||||||||||||||| ||||||||    
T  16571783 agtaacttggtaaaaataattattcccacttaaaacac 16571820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 7 - 250
Target Start/End: Original strand, 15711818 - 15712058
Alignment:
Q  7 gtgagatgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatgg 106  Q
    |||| |||| |||||||||||| ||||||||||||||||||||||| |||||| |||   | || |||||||||||| ||||| |||||||||||||||     
T  15711818 gtgaaatgagtgaatgaatgtaatgacctaattttctcacaagtgttgtgtttatattgcc-ac-cataattgggct-aagtctctaattgtcttaatga 15711914  T
Q  107 actcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcatta 206  Q
     ||||| | ||||| |||||||||| ||||||||||||| ||||||||  ||||| |||| |||||| ||  || | ||| |||| | ||||||||| ||    
T  15711915 gctcaacactcttaccaactaattctccaaagttactactcacttaaactgtcaaaataacgaataactactgtgtataattaatcatcccaactcacta 15712014  T
Q  207 gttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    || | | |||||||||||||||| |||| |||||||||||||||    
T  15712015 gtaaatcagtaaaaataattatttccacttaaaacactaaaaat 15712058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 11776614 - 11776830
Alignment:
Q  17 tgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactcaatatt 116  Q
    |||||||||||| | |||||||||||||||||  || ||| || | || ||  ||||||| |||||| | ||| |||| |||||||  |  |||||||||    
T  11776614 tgaatgaatgtaatcacctaattttctcacaaaggttgtgcttatgtagtcaccacataaatgggct-aggtctctaaatgtcttagcgagctcaatatt 11776712  T
Q  117 cttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttacttagt 216  Q
    |||| ||| ||||||| |||||||||||||| |||||| |||||| |||| ||||||||  ||||| |||||||||||||||||||| |||| |||||||    
T  11776713 cttaccaagtaattcatcaaagttactacactcttaaaccgtcaaaataacgaataatttccgtctttaaataattaccccaactcaatagtaacttagt 11776812  T
Q  217 aaaaataattattcccac 234  Q
    ||||||||||| ||||||    
T  11776813 aaaaataattactcccac 11776830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 21982361 - 21982597
Alignment:
Q  12 atgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactca 111  Q
    |||| ||||||||  || ||||||||||||||||||||  |||||||| |||| ||   ||  || || ||| || || ||| |||||||||||| ||||    
T  21982361 atgagtgaatgaagataatgacctaattttctcacaagactagtgtttatatagtcactactcaaatgagctcaa-tctctagttgtcttaatgggctca 21982459  T
Q  112 atattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaa-taattaccccaactcattagtta 210  Q
    ||||||||| ||||||||| ||||| ||||||||||||||||| |||||| |||| ||||| ||| |||||||||| ||||||||  |||||| |||| |    
T  21982460 atattcttaccaactaatt-accaa-gttactacacacttaaaccgtcaaaataacgaatagttaccgtctctaaagtaattaccataactcactagtaa 21982557  T
Q  211 cttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    |||||||||||||||||||||||| ||||  |||||||||    
T  21982558 cttagtaaaaataattattcccacttaaagtactaaaaat 21982597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 203
Target Start/End: Original strand, 15692624 - 15692756
Alignment:
Q  70 cacataattgggcttaagtccctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatga 169  Q
    |||||||||||||| | ||  ||||||||||||||||  |||||||||||| |||||||||||||||||||||||| |||||||| | |||| |||  ||    
T  15692624 cacataattgggct-aggtttctaattgtcttaatgggttcaatattcttaccaactaattcaccaaagttactactcacttaaaccatcaaaataccga 15692722  T
Q  170 ataattatcgtctctaaataattaccccaactca 203  Q
    |||||||  ||||||||||||||||| |||||||    
T  15692723 ataattactgtctctaaataattacctcaactca 15692756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 89 - 250
Target Start/End: Original strand, 28801280 - 28801438
Alignment:
Q  89 ccctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaat 188  Q
    ||||| || ||||||||  |||||||||||||  | |||||||||| | |||||||| |||||||  | |||| |||| |||||| || ||||||||| |    
T  28801280 ccctagttatcttaatgagctcaatattcttactagctaattcaccga-gttactactcacttaac-catcaa-ataacgaataaataccgtctctaatt 28801376  T
Q  189 aattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||||||| ||||||| |||| ||||||||||||||||||||||||| ||||| |||||||||    
T  28801377 aattaccacaactcactagtaacttagtaaaaataattattcccacttaaaatactaaaaat 28801438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 9273111 - 9273250
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    ||||||||| |||||| ||||| || ||||  ||||||||| | ||||||| ||| ||||||||  || || | |  ||||||||| | |||||||||||    
T  9273111 ctaattgtcataatgggctcaacatccttactaactaattcgcaaaagttaatactcacttaaactgttaaaacaccgaataattaacatctctaaataa 9273210  T
Q  191 ttaccccaactcattagttacttagtaaaaataattattc 230  Q
    ||||||||||||| |||| |||||||||||||||||||||    
T  9273211 ttaccccaactcactagtaacttagtaaaaataattattc 9273250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 19890071 - 19890210
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    ||||||||| ||||||| |||| || ||||  ||||||||| | ||||| | ||| |||||||| ||| || | |  ||||||||||| |||||||||||    
T  19890071 ctaattgtcataatggattcaacatccttactaactaattctcaaaagtaattactcacttaaaccgttaaaacaccgaataattatcatctctaaataa 19890170  T
Q  191 ttaccccaactcattagttacttagtaaaaataattattc 230  Q
    ||||||||||||| |||| |||||||||||||||| ||||    
T  19890171 ttaccccaactcactagtaacttagtaaaaataatcattc 19890210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 17960338 - 17960477
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    ||||||||| |||||  || || || |||| |||||||||| | ||||||||||| |||||||| ||| || | | ||| |||||||  |||||||||||    
T  17960338 ctaattgtcataatgcgcttaacatccttaacaactaattctcaaaagttactactcacttaaaccgttaaaacactgagtaattataatctctaaataa 17960437  T
Q  191 ttaccccaactcattagttacttagtaaaaataattattc 230  Q
    ||||||||||||| || | |||||||||||||||| ||||    
T  17960438 ttaccccaactcactaataacttagtaaaaataatcattc 17960477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 168 - 230
Target Start/End: Complemental strand, 19605331 - 19605269
Alignment:
Q  168 gaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaataattattc 230  Q
    ||||||||||| |||| ||||||||||||||||||| |||| |||||||||||||||||||||    
T  19605331 gaataattatcatctcgaaataattaccccaactcactagtaacttagtaaaaataattattc 19605269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 91 - 230
Target Start/End: Original strand, 9253140 - 9253279
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    ||||||||| |||||| ||||| || ||||  ||||||||| | ||||||| ||| |||||||| ||| || | |  |||||||||   ||||||||| |    
T  9253140 ctaattgtcataatgggctcaacatccttactaactaattcgcaaaagttaatactcacttaaaccgttaaaacaccgaataattactatctctaaatga 9253239  T
Q  191 ttaccccaactcattagttacttagtaaaaataattattc 230  Q
    ||||||||||| | |||| |||||||||||||| ||||||    
T  9253240 ttaccccaacttactagtaacttagtaaaaatatttattc 9253279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 169 - 229
Target Start/End: Complemental strand, 6189185 - 6189125
Alignment:
Q  169 aataattatcgtctctaaataattaccccaactcattagttacttagtaaaaataattatt 229  Q
    |||||||||| || |||||||||||| |||||||| |||| ||||||||||||||| ||||    
T  6189185 aataattatcatccctaaataattactccaactcactagtaacttagtaaaaataactatt 6189125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 89 - 248
Target Start/End: Original strand, 9567046 - 9567199
Alignment:
Q  89 ccctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaat 188  Q
    ||||| |||| ||||||  ||||||||||||| ||| ||||||||| | |||||||| ||||||| | || || |||| ||||  ||| ||| ||||| |    
T  9567046 ccctacttgtattaatgagctcaatattcttaccaattaattcaccga-gttactactcacttaatt-gtaaaaataacgaattgttaccgtatctaatt 9567143  T
Q  189 aattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaa 248  Q
    ||||||| |||| ||  |    |||||||||||||||||||| ||| |||||||||||||    
T  9567144 aattaccacaacccacga----cttagtaaaaataattattctcacttaaaacactaaaa 9567199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 9652574 - 9652636
Alignment:
Q  188 taattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    |||||||| ||||||| |||| ||||||||||||||||  ||||||| | |||||||||||||    
T  9652574 taattaccacaactcactagtaacttagtaaaaataatggttcccacttgaaacactaaaaat 9652636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 9245474 - 9245532
Alignment:
Q  168 gaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaataatt 226  Q
    ||||||||||  ||||||||||||||| |||||||| |||| |||||| ||||| ||||    
T  9245474 gaataattattatctctaaataattactccaactcactagtaacttagaaaaaaaaatt 9245532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 96; Significance: 3e-47; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 28774638 - 28774876
Alignment:
Q  12 atgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactca 111  Q
    |||| |||||||||||| |||||||| ||||||||| |  |||||||| |||| ||   ||| || |||||||| |||  || |||||||||| | ||||    
T  28774638 atgagtgaatgaatgtaatgacctaactttctcacaggactagtgtttatatagtcactacacaaatgggctta-gtctatagttgtcttaataggctca 28774736  T
Q  112 atattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaa-ataattaccccaactcattagtta 210  Q
    ||||||||| ||||||||||||||||||||||||||||||||| |||||| |||| ||||||||| ||||||||| ||||||||| ||||||| | || |    
T  28774737 atattcttaccaactaattcaccaaagttactacacacttaaaccgtcaaaataacgaataattaccgtctctaagataattacctcaactcactggtaa 28774836  T
Q  211 cttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||||||||||||||  |||||||| ||||| |||| ||||    
T  28774837 cttagtaaaaataacgattcccacttaaaaaactacaaat 28774876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 21654686 - 21654845
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    ||||||||| |||||| || || ||||||| |||||||||| | ||||||||||| ||||||||  ||||| |||  ||||||||| |||||||||||||    
T  21654686 ctaattgtcataatgggctaaacattcttaccaactaattctcaaaagttactactcacttaaactgtcaaaataccgaataattaccgtctctaaataa 21654785  T
Q  191 ttaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    |||| | |||||| || | ||||||||||||||||||||| |||| ||| ||| ||||||    
T  21654786 ttactcaaactcactattaacttagtaaaaataattattctcacccaaaccaccaaaaat 21654845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 234
Target Start/End: Original strand, 27354008 - 27354150
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    |||||| ||||||||| || || ||||||| ||| || ||| ||||||||||||||||||||||||||||| |||  |||||||||   ||| |||||||    
T  27354008 ctaattatcttaatgggcttaacattcttaccaaatatttccccaaagttactacacacttaaatcgtcaaaatagcgaataattacgatctataaataa 27354107  T
Q  191 ttaccccaactcattagttacttagtaaaaataattattcccac 234  Q
    ||| ||||||| | |||| ||||||||||||||| |||||||||    
T  27354108 tta-cccaacttactagtaacttagtaaaaataactattcccac 27354150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 250
Target Start/End: Original strand, 20510734 - 20510954
Alignment:
Q  12 atgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactca 111  Q
    |||| |||||||| ||| |||||||||||||||| |||  |||||||| |||| ||   ||| || |||||||||  | ||| |||||||||||| ||||    
T  20510734 atgagtgaatgaaggtaatgacctaattttctcataagactagtgtttatatagtcactacacaaatgggcttaac-ctctagttgtcttaatgggctca 20510832  T
Q  112 atattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttac 211  Q
    ||||||||| | ||||||||| ||||||||||||||||||||| | ||||  |||||                  ||||||||||||||||| |||| ||    
T  20510833 atattcttaccgactaattcagcaaagttactacacacttaaaccatcaaactaatg-----------------gataattaccccaactcactagtaac 20510915  T
Q  212 ttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    || |||||||||||||||||||| |||||||||||||||    
T  20510916 ttggtaaaaataattattcccacttaaaacactaaaaat 20510954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 19901933 - 19901864
Alignment:
Q  181 ctctaaataattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||||||||||||||| |||||||||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  19901933 ctctaaataattaccgcaactcattagtaacttagtaaaaataattattcacacttaaaacactaaaaat 19901864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 250
Target Start/End: Original strand, 19285083 - 19285210
Alignment:
Q  123 aactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaat 222  Q
    ||||||||| | |||||||| || |||||||  |||||| |||||||||||||| ||||||||||||||||   ||||||| | || ||| |||||||||    
T  19285083 aactaattctcaaaagttacaactcacttaagccgtcaaaataatgaataattaccgtctctaaataattatttcaactcacttgtaactcagtaaaaat 19285182  T
Q  223 aattattcccacctaaaacactaaaaat 250  Q
    || ||||| |||  ||||||| ||||||    
T  19285183 aactattctcactgaaaacaccaaaaat 19285210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 95 - 249
Target Start/End: Original strand, 18995727 - 18995880
Alignment:
Q  95 ttgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattac 194  Q
    |||||||||| | ||||||||||||| ||  ||| ||||| | || ||||||   ||||| ||| || |||| ||||| ||| ||||||||| |||||||    
T  18995727 ttgtcttaattggctcaatattcttaacatataactcaccga-gtcactacattattaaaccgttaaaataacgaatagttaccgtctctaattaattac 18995825  T
Q  195 cccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaa 249  Q
    | ||||||| |||| | |||||||||||||| ||||| || ||||||||||||||    
T  18995826 cacaactcactagtaaattagtaaaaataatcattcctacttaaaacactaaaaa 18995880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 225
Target Start/End: Complemental strand, 34896380 - 34896290
Alignment:
Q  135 aaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaataat 225  Q
    ||||||||||| |||||||| ||| || | |  || |||||| |  |||||||||||||||||||||||||||| ||||||||||||||||    
T  34896380 aaagttactactcacttaaaccgttaaaacaccgattaattaccaactctaaataattaccccaactcattagtaacttagtaaaaataat 34896290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 180 - 230
Target Start/End: Complemental strand, 29744304 - 29744254
Alignment:
Q  180 tctctaaataattaccccaactcattagttacttagtaaaaataattattc 230  Q
    |||||||||||||||||||||||| |||| ||||||||||||||| |||||    
T  29744304 tctctaaataattaccccaactcactagtaacttagtaaaaataactattc 29744254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 230
Target Start/End: Complemental strand, 21909765 - 21909630
Alignment:
Q  94 attgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataatta 193  Q
    |||||||||||||||| || |||| || |||||| ||| | |||||||||||  |||||| ||||||| |    ||| ||||| | ||||  ||||||||    
T  21909765 attgtcttaatggacttaacattcctaccaactatttctctaaagttactactaacttaa-tcgtcaaaactccgaacaattaccatctccgaataatta 21909667  T
Q  194 ccccaactcattagttacttagtaaaaataattattc 230  Q
    |||||||||| |||| |||| ||||||||||| ||||    
T  21909666 ccccaactcactagtaacttggtaaaaataatcattc 21909630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 8273 - 8506
Alignment:
Q  17 tgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatggactcaatatt 116  Q
    |||||||||||| | ||||||| |||||||||    ||||||| |||| ||   ||| || |||||||| ||| ||| |||||||||||| |||||||||    
T  8273 tgaatgaatgtaataacctaatattctcacaaaacaagtgtttatatagtcactacacaaatgggctta-gtctctagttgtcttaatgggctcaatatt 8371  T
Q  117 cttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctc-taaataattaccccaactcattagttacttag 215  Q
    |||| ||||||||||||||||||||||||||||||||| | |||| |||| ||||||||  |||||| |||||| |||||| |||| |||||| ||||||    
T  8372 cttaccaactaattcaccaaagttactacacacttaaaccatcaaaataacgaataattgccgtctcttaaatagttacccaaactaattagtaacttag 8471  T
Q  216 taaaaataattattcccacctaaaacactaaaaat 250  Q
    |||||||||| |||||||| ||||||| |||||||    
T  8472 taaaaataatcattcccacttaaaacattaaaaat 8506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 242
Target Start/End: Complemental strand, 6674 - 6522
Alignment:
Q  89 ccctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaat 188  Q
    ||||| |||||||||| | ||||||||||||| ||||||||||||| | ||||||||||||||||| ||| || |||||||||| ||| ||||| ||| |    
T  6674 ccctagttgtcttaataggctcaatattcttaccaactaattcaccga-gttactacacacttaaaccgttaaaataatgaatagttaccgtctttaatt 6576  T
Q  189 aattaccccaactcattagttacttagtaaaaataattattcccacctaaaaca 242  Q
    ||||||| ||||||| |||| |||||||||||||||| |||||||| |||||||    
T  6575 aattaccacaactcactagtaacttagtaaaaataatcattcccacttaaaaca 6522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 242
Target Start/End: Complemental strand, 14256 - 14104
Alignment:
Q  89 ccctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaat 188  Q
    ||||| |||||||||| | ||||||||||||| ||||||||||||| | ||||||||||||||||| ||| || |||||||||| ||| ||||| ||| |    
T  14256 ccctagttgtcttaataggctcaatattcttaccaactaattcaccga-gttactacacacttaaaccgttaaaataatgaatagttaccgtctttaatt 14158  T
Q  189 aattaccccaactcattagttacttagtaaaaataattattcccacctaaaaca 242  Q
    ||||||| ||||||| |||| |||||||||||||||| |||||||| |||||||    
T  14157 aattaccacaactcactagtaacttagtaaaaataatcattcccacttaaaaca 14104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 242
Target Start/End: Complemental strand, 24208 - 24056
Alignment:
Q  89 ccctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaat 188  Q
    ||||| |||||||||| | ||||||||||||| ||||||||||||| | ||||||||||||||||| ||| || |||||||||| ||| ||||| ||| |    
T  24208 ccctagttgtcttaataggctcaatattcttaccaactaattcaccga-gttactacacacttaaaccgttaaaataatgaatagttaccgtctttaatt 24110  T
Q  189 aattaccccaactcattagttacttagtaaaaataattattcccacctaaaaca 242  Q
    ||||||| ||||||| |||| |||||||||||||||| |||||||| |||||||    
T  24109 aattaccacaactcactagtaacttagtaaaaataatcattcccacttaaaaca 24056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 74 - 234
Target Start/End: Complemental strand, 892 - 733
Alignment:
Q  74 taattgggcttaagtccctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataa 173  Q
    |||||||| ||||||  |||||||| ||||||  || ||||||||||||||||||||||| ||||||||||| |||||||| ||| || |||  ||||||    
T  892 taattggg-ttaagtttctaattgttttaatgagcttaatattcttagcaactaattcacaaaagttactactcacttaaaccgttaaaataccgaataa 794  T
Q  174 ttatcgtctctaaataattaccccaactcattagttacttagtaaaaataattattcccac 234  Q
    ||| | |||||||||||||| ||||||||| |||| |||||| ||||||||||||||||||    
T  793 ttaccatctctaaataattatcccaactcactagtaacttagcaaaaataattattcccac 733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 91 - 230
Target Start/End: Complemental strand, 204451 - 204313
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    ||||||||| ||||||||| || ||||||| |||||||||| | ||||||| ||| |||||||| |||||| ||||||||||||||||||||| ||||||    
T  204451 ctaattgtcataatggacttaacattcttaccaactaattctcaaaagttagtactcacttaaaccgtcaa-ataatgaataattatcgtctccaaataa 204353  T
Q  191 ttaccccaactcattagttacttagtaaaaataattattc 230  Q
    ||||| ||| |||||||| |||| ||||||||||||||||    
T  204352 ttacctcaagtcattagtaacttggtaaaaataattattc 204313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0964 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0964
Description:

Target: scaffold0964; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 95 - 250
Target Start/End: Original strand, 2653 - 2808
Alignment:
Q  95 ttgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattac 194  Q
    |||| ||||||| || |||||| ||| ||||| ||||||||| | ||||||||||||||| |||||| |||||||||||||| ||||| ||| |||||||    
T  2653 ttgttttaatgggctgaatatttttaccaactgattcaccaaggctactacacacttaaaccgtcaaaataatgaataattaccgtctttaattaattac 2752  T
Q  195 cccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||||||||| | || | || ||||||||||||||| |||| || ||||||||||||    
T  2753 cccaactcacttgtaagttggtaaaaataattattgccacttataacactaaaaat 2808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 4101 - 4259
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    ||||||||| |||||  || || |||||||  || |||||| | ||||||||||| ||||||||  || || | |  ||||||||||| |||||||||||    
T  4101 ctaattgtcataatgagcttaacattcttattaattaattctcaaaagttactactcacttaaactgttaaaacatcgaataattatcatctctaaataa 4200  T
Q  191 ttaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||||||||||||| |||| | ||||||||||||||||||| || ||||||||| ||||||    
T  4201 ttaccccaactcactagtaaattagtaaaaataattattctca-ctaaaacaccaaaaat 4259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0959 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0959
Description:

Target: scaffold0959; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 230
Target Start/End: Original strand, 2136 - 2273
Alignment:
Q  93 aattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataatt 192  Q
    ||||||| |||||| ||||| || ||||  ||||||||| | ||||||||||| | |||||| ||| || | |  ||||||||| | | |||||||||||    
T  2136 aattgtcataatgggctcaacatccttactaactaattctcaaaagttactactcccttaaaacgttaaaacaccgaataattagcatgtctaaataatt 2235  T
Q  193 accccaactcattagttacttagtaaaaataattattc 230  Q
    ||||||||||| |||| |||||||||||||||||||||    
T  2236 accccaactcaatagtaacttagtaaaaataattattc 2273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 7 - 243
Target Start/End: Original strand, 61494 - 61728
Alignment:
Q  7 gtgagatgaatgaatgaatgtagtgacctaattttctcacaagtgtagtgtttgtataatctacacataattgggcttaagtccctaattgtcttaatgg 106  Q
    |||| |||| ||||| ||||||  |||||||||||||||||||||| ||||||  ||||||  | |  || ||| |||  ||   |||||||||||| ||    
T  61494 gtgaaatgagtgaattaatgtaaagacctaattttctcacaagtgttgtgtttacataatcacctctcaaatggacttg-gtttgtaattgtcttaaagg 61592  T
Q  107 actcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattaccccaactcatta 206  Q
     ||||| | ||||| | |||||||| ||||| ||||||  || |||||||||||| |||| |||||| |||||  ||||||||||||| ||||| || ||    
T  61593 gctcaacactcttaccgactaattctccaaaattactaatcaattaaatcgtcaaaataacgaataaatatcgcttctaaataattactccaacccacta 61692  T
Q  207 gttacttagtaaaaataattattcccacctaaaacac 243  Q
    || ||||||||||| |||  ||||||| |||||||||    
T  61693 gtgacttagtaaaattaaccattccca-ctaaaacac 61728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 91 - 250
Target Start/End: Complemental strand, 42724 - 42559
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaac-------ataatgaataattatcgtctc 183  Q
    |||||||||||||||   |||| ||||||| |||||||||| | ||||||||||| ||||||||  || ||        |||  ||||||||| ||||||    
T  42724 ctaattgtcttaatgagttcaacattcttaccaactaattctcaaaagttactactcacttaaaaagttaaactgtcagatatcgaataattaccgtctc 42625  T
Q  184 taaataattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||||||||||| |||||||| |||| ||||| ||||||||||||||| |||| ||||||| ||||||    
T  42624 taaataattactccaactcactagtaacttaataaaaataattattctcacc-aaaacaccaaaaat 42559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 89 - 250
Target Start/End: Original strand, 19386 - 19545
Alignment:
Q  89 ccctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaat 188  Q
    ||||| ||||| |||| | |||||||||||||  | |||||||||| |  |||||||||||||||  | || | |||| || |||||||  ||| |||||    
T  19386 ccctagttgtcataataggctcaatattcttattatctaattcaccgat-ttactacacacttaac-catcgaaataacgagtaattattttctttaaat 19483  T
Q  189 aattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    ||||| |   ||||| |||| ||||||||||||||||||||||||| |||||||||||||||    
T  19484 aattatcatcactcactagtaacttagtaaaaataattattcccacttaaaacactaaaaat 19545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1114 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold1114
Description:

Target: scaffold1114; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 2517 - 2579
Alignment:
Q  168 gaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaataattattc 230  Q
    ||||||||||| | |||||||||||||||||||||| |||| ||||||||||||||| |||||    
T  2517 gaataattatcatatctaaataattaccccaactcactagtaacttagtaaaaataactattc 2579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 95 - 229
Target Start/End: Complemental strand, 18051 - 17918
Alignment:
Q  95 ttgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataattac 194  Q
    |||| ||||| | ||||||||||||| |||||||||| | ||| ||||||| |||||||| |||||| |||| ||||||||| |  | |||||||||||     
T  18051 ttgttttaataggctcaatattcttaccaactaattctcaaaatttactactcacttaaaccgtcaaaataaagaataattaccacccctaaataatta- 17953  T
Q  195 cccaactcattagttacttagtaaaaataattatt 229  Q
    || |||| | |||| ||||||||||| ||| ||||    
T  17952 ccaaacttactagtaacttagtaaaactaactatt 17918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0753 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 93 - 230
Target Start/End: Complemental strand, 1619 - 1482
Alignment:
Q  93 aattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataatt 192  Q
    ||||||| |||||| ||||| || ||||  ||| ||||| | ||||||||||| |||||||| ||| || |||  ||||||||| | |||||||||||||    
T  1619 aattgtcataatgggctcaacatccttactaaccaattctcaaaagttactactcacttaaaccgttaaaatatcgaataattaccatctctaaataatt 1520  T
Q  193 accccaactcattagttacttagtaaaaataattattc 230  Q
    |  |||||||| |||| ||||  |||||| ||||||||    
T  1519 attccaactcactagtaactttttaaaaaaaattattc 1482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 91 - 224
Target Start/End: Complemental strand, 29874 - 29741
Alignment:
Q  91 ctaattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataa 190  Q
    |||||||||||||||  || || ||||||| |||||||||| | ||||||||||| |||||||  ||  || |||   ||||||||   |||||||||||    
T  29874 ctaattgtcttaatgagcttaacattcttaccaactaattctcaaaagttactactcacttaatccgctaaaataccaaataattacaatctctaaataa 29775  T
Q  191 ttaccccaactcattagttacttagtaaaaataa 224  Q
    ||||| ||||||| |||| | |||||||||||||    
T  29774 ttacctcaactcactagtaaattagtaaaaataa 29741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 25117 - 25179
Alignment:
Q  188 taattaccccaactcattagttacttagtaaaaataattattcccacctaaaacactaaaaat 250  Q
    |||||||||||||||| |||| ||||||||||||||  ||||  || | ||||||||||||||    
T  25117 taattaccccaactcactagtaacttagtaaaaatatatattgtcatccaaaacactaaaaat 25179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0412 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 250
Target Start/End: Original strand, 3771 - 3859
Alignment:
Q  163 ataatgaataattatcgtctctaaataattaccccaactcattagttacttagt-aaaaataattattcccacctaaaacactaaaaat 250  Q
    |||| ||||| ||| ||||||||| |||||||| ||||||| |||| ||||||| ||||||||||||| |||| ||||| |||||||||    
T  3771 ataacgaatagttaccgtctctaattaattaccacaactcactagtaacttagtaaaaaataattatttccacttaaaatactaaaaat 3859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0416 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0416
Description:

Target: scaffold0416; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 230
Target Start/End: Complemental strand, 15481 - 15343
Alignment:
Q  92 taattgtcttaatggactcaatattcttagcaactaattcaccaaagttactacacacttaaatcgtcaacataatgaataattatcgtctctaaataat 191  Q
    |||||||| ||||| |||||| || ||||  ||||||||| | ||||||||||| |||||||   |  || |||   |||||||| | |||||||||||     
T  15481 taattgtcataatgaactcaacatgcttactaactaattctcaaaagttactactcacttaatctgctaaaatacctaataattaccatctctaaataaa 15382  T
Q  192 taccccaactcattagttacttagtaaaaataattattc 230  Q
    |||||||||||| |||| ||||||| |||||| ||||||    
T  15381 taccccaactcactagtaacttagtcaaaatagttattc 15343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 230
Target Start/End: Original strand, 155392 - 155454
Alignment:
Q  168 gaataattatcgtctctaaataattaccccaactcattagttacttagtaaaaataattattc 230  Q
    ||||||||| | | |||||||||||||| ||||| | |||| |||||||||||||||||||||    
T  155392 gaataattagcatttctaaataattacctcaactgactagtaacttagtaaaaataattattc 155454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 19634 - 19679
Alignment:
Q  180 tctctaaataattaccccaactcattagttacttagtaaaaataat 225  Q
    |||| ||||||||| ||||||||| |||| ||||||||||||||||    
T  19634 tctccaaataattatcccaactcactagtaacttagtaaaaataat 19679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University