View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14138_low_55 (Length: 247)
Name: NF14138_low_55
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_55 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 36147490 - 36147700
Alignment:
| Q |
18 |
tcttcaaaatctctcattatctccaaagcacaatccacactctcaatttgtgcacttctcctattcacaactctcctcctcttcaccctctccacactcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36147490 |
tcttcaaaatctctcattatctccaaagcacaatctacactctcaatctgtgcacttctcctcttcacaactctcctcctcttcaccctctccacactcc |
36147589 |
T |
|
| Q |
118 |
caaccaacccaccatcaccatcccccttacgacgtcgtttccttcttaaccaccacaacaaccaccattttgctcttcaaaaaatgggcaccctctatct |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36147590 |
caaccaccccaccatcaccatcccccttacgacgtcgtttccttcttaaccaccacaacaaccaccattttgctcttcaaaaaatgggcaccctctatct |
36147689 |
T |
|
| Q |
218 |
ccgtggcacta |
228 |
Q |
| |
|
||||||||||| |
|
|
| T |
36147690 |
ccgtggcacta |
36147700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 140
Target Start/End: Original strand, 26573457 - 26573511
Alignment:
| Q |
86 |
aactctcctcctcttcaccctctccacactcccaaccaacccaccatcaccatcc |
140 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||| | || |||||||||||||||| |
|
|
| T |
26573457 |
aactctcttcctctccaccctctccacaccccctaacaccccaccatcaccatcc |
26573511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University