View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_low_56 (Length: 246)
Name: NF14138_low_56
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_56 |
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| [»] scaffold0160 (1 HSPs) |
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| [»] scaffold0077 (1 HSPs) |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 111 - 228
Target Start/End: Complemental strand, 14565877 - 14565760
Alignment:
| Q |
111 |
tctctcccactaaaaagaattttcactctcaaaaattacgtgaagaaaacaaccccaaatacaaaacccttatcctcttattcccatgtagcactctcaa |
210 |
Q |
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|||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||| ||| ||||||||||| ||||||||||||||||||||| |
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| T |
14565877 |
tctcccccactaaaaagaattttcaccctcgaaaattacgtgaagaaaacaaccccggatacgaaaaccttatcctctaattcccatgtagcactctcaa |
14565778 |
T |
|
| Q |
211 |
tatttttccctcaaatct |
228 |
Q |
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|||||||||||||||||| |
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| T |
14565777 |
tatttttccctcaaatct |
14565760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 18571223 - 18571275
Alignment:
| Q |
111 |
tctctcccactaaaaagaattttcactctcaaaaattacgtgaagaaaacaac |
163 |
Q |
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|||| ||| ||||||||||||||||| ||| |||||||| ||||| ||||||| |
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| T |
18571223 |
tctccccccctaaaaagaattttcaccctcgaaaattacctgaaggaaacaac |
18571275 |
T |
|
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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 120 - 178
Target Start/End: Original strand, 13352857 - 13352915
Alignment:
| Q |
120 |
ctaaaaagaattttcactctcaaaaattacgtgaagaaaacaaccccaaatacaaaacc |
178 |
Q |
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||||||||||||||| | ||| |||||||| ||||| ||||||| |||||||| ||||| |
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| T |
13352857 |
ctaaaaagaattttcgccctcgaaaattacctgaaggaaacaactccaaatacgaaacc |
13352915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 13378393 - 13378445
Alignment:
| Q |
111 |
tctctcccactaaaaagaattttcactctcaaaaattacgtgaagaaaacaac |
163 |
Q |
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|||| ||| ||||||||||||||||| ||| |||||||| ||||| ||||||| |
|
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| T |
13378393 |
tctccccccctaaaaagaattttcaccctcgaaaattacctgaaggaaacaac |
13378445 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 925 - 977
Alignment:
| Q |
111 |
tctctcccactaaaaagaattttcactctcaaaaattacgtgaagaaaacaac |
163 |
Q |
| |
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|||| ||| ||||||||||||||| | ||| |||||||| ||||||||||||| |
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| T |
925 |
tctccccccctaaaaagaattttcgccctcgaaaattacctgaagaaaacaac |
977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0077 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0077
Description:
Target: scaffold0077; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 36274 - 36222
Alignment:
| Q |
111 |
tctctcccactaaaaagaattttcactctcaaaaattacgtgaagaaaacaac |
163 |
Q |
| |
|
|||| ||| ||||||||||||||| | ||| |||||||||||||| ||||||| |
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|
| T |
36274 |
tctccccccctaaaaagaattttcgccctcgaaaattacgtgaaggaaacaac |
36222 |
T |
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Target: scaffold0004 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 370678 - 370626
Alignment:
| Q |
111 |
tctctcccactaaaaagaattttcactctcaaaaattacgtgaagaaaacaac |
163 |
Q |
| |
|
|||| ||||||||||||||||||| ||| |||||||| ||||||||||||| |
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|
| T |
370678 |
tctcccccactaaaaagaattttcgtcctcgaaaattacctgaagaaaacaac |
370626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 11211440 - 11211388
Alignment:
| Q |
111 |
tctctcccactaaaaagaattttcactctcaaaaattacgtgaagaaaacaac |
163 |
Q |
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|||| ||| ||||||||||||||||| ||| |||||||| ||||| ||||||| |
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| T |
11211440 |
tctccccccctaaaaagaattttcaccctcgaaaattacctgaaggaaacaac |
11211388 |
T |
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