View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_low_58 (Length: 240)
Name: NF14138_low_58
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_58 |
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Alignment Details
Target: chr2 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 6048232 - 6048434
Alignment:
| Q |
19 |
tatttaccatggagtatgtgtaaatattctcgtcttgatttctaaaaatctggaccactaattaaatccaatgttgtattttctactttgnnnnnnnnca |
118 |
Q |
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| T |
6048232 |
tatttaccatggagtatgtgtaaatattcttgtcttgatttctaaaaatctggaccactaattaaatccaatgttgtattttctactttgttttttttca |
6048331 |
T |
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| Q |
119 |
tcaaagcaagaaaaattaaaatgcaaacaggaggaggcctggaccttaatgaatacatcatagagcccctaaagtccttagccaagcaaacaagaaacta |
218 |
Q |
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| T |
6048332 |
tcaaagcaagaaaaattaaaatgcaaacaggaggaggcctggacctt----aatacatcatagagcccctaaagtccttagccaagcaaacaagaaacaa |
6048427 |
T |
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| Q |
219 |
agaataa |
225 |
Q |
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||||||| |
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| T |
6048428 |
agaataa |
6048434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 35553943 - 35553992
Alignment:
| Q |
118 |
atcaaagcaagaaaaattaaaatgcaaa-caggaggaggcctggacctta |
166 |
Q |
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| T |
35553943 |
atcaaagcaagaaaaattaaaatgcaaatcaggaggaggcctgaacctta |
35553992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 28101457 - 28101506
Alignment:
| Q |
118 |
atcaaagcaagaaaaattaaaatgcaaa-caggaggaggcctggacctta |
166 |
Q |
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| T |
28101457 |
atcaaagcaagaaaaattaaaatgcaaagcaggaggaggcctgaacctta |
28101506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 3248213 - 3248262
Alignment:
| Q |
118 |
atcaaagcaagaaaaattaaaatgcaaa-caggaggaggcctggacctta |
166 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
3248213 |
atcaaagcaagaaaaattaaaatgcaaagtaggaggaggcctgaacctta |
3248262 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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