View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_low_72 (Length: 220)
Name: NF14138_low_72
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_72 |
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Alignment Details
Target: chr7 (Bit Score: 101; Significance: 3e-50; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 41 - 204
Target Start/End: Complemental strand, 1525660 - 1525497
Alignment:
| Q |
41 |
attagatccagcaagtccaatccaaattgcaaatgtgtggacccatataccaaaattgaatgatacacctatacatacatg-gaaccaatatgtcatgct |
139 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||| || | ||||| ||||||| |
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| T |
1525660 |
attagatccaacaagtccaatccaaattgcaaatgtgtggacccatataccaaaattggataatacacctaaacatacatgagaccaaatatatcatgct |
1525561 |
T |
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| Q |
140 |
ttatacacagcataatattaaatcaaaatttaattattataatcgtgaatccttattcaagttat |
204 |
Q |
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| T |
1525560 |
ttatacaca-tagaatattaaaccaaaatttaattcttataatcgtgagtccttattcaagttat |
1525497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 41 - 201
Target Start/End: Original strand, 8517041 - 8517199
Alignment:
| Q |
41 |
attagatccagcaagtccaatccaaattgcaaatgtgtggacccatataccaaaattgaatgatacacctatacatacatggaaccaatatgtcatgctt |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||| || | | |||||||||||||| ||||||||||||||||| |
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| T |
8517041 |
attagatccagcaagtccaatccaaattgcaaatgtgtggacccatgtttaaaaattagataaaaggcctatacatacatgagaccaatatgtcatgctt |
8517140 |
T |
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| Q |
141 |
tatacacagcataatattaaatcaaaatttaattattataatcgtgaatccttattcaagt |
201 |
Q |
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| T |
8517141 |
cagaggcag--aaatattaaaccaaaatttaattcttataatcgtgaatccttattcaagt |
8517199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 41 - 193
Target Start/End: Original strand, 8490236 - 8490388
Alignment:
| Q |
41 |
attagatccagcaagtccaatccaaattgcaaatgtgtggacccatataccaaaattgaatgatacacctatacatacatggaaccaatatgtcatgctt |
140 |
Q |
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| T |
8490236 |
attagatccagcaagtccaatccaaattgcaaatgtgtggacccatgtttaaaaattagataaaaggcctatacatacatgagaccaatatgtcatgctt |
8490335 |
T |
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| Q |
141 |
tatacacagca-taatattaaatcaaaatttaattattataatcgtgaatcctt |
193 |
Q |
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||| | ||| ||||||||| |||||||||||| |||||||||||||||||| |
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| T |
8490336 |
cataga-ggcagaaatattaaaccaaaatttaattcttataatcgtgaatcctt |
8490388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 8485241 - 8485340
Alignment:
| Q |
41 |
attagatccagcaagtccaatccaaattgcaaatgtgtggacccatataccaaaattgaatgatacacctatacatacatggaaccaatatgtcatgctt |
140 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| | |||||| || | | |||||||||||||| ||||||||||||||||| |
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| T |
8485241 |
attagatccagcaagtccaatccaaattgcaaatgtgtggacccatgtttaaaaattagataaaaggcctatacatacatgagaccaatatgtcatgctt |
8485340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 29712057 - 29711894
Alignment:
| Q |
41 |
attagatccagcaagtccaatccaaattgcaaatgtgtgg---acccatataccaaaattgaatgatacacctatacatacatggaaccaatatgtcatg |
137 |
Q |
| |
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||||||| |||||||||||||||||||||||||| ||||| ||||| | |||| ||| | |||| |||||||||||||| |||||||||||||| |
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| T |
29712057 |
attagattcagcaagtccaatccaaattgcaaatatgtggtggacccactttccaacattagaaaatacgcctatacatacatgagaccaatatgtcatg |
29711958 |
T |
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| Q |
138 |
ctttatacacagcataa-tattaaatcaaaatttaattattataatcgtgaatccttattcaagt |
201 |
Q |
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||| |||||| ||| || |||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
29711957 |
cttcatacac-gcagaaatattaaatcaaaatttaattcttataatcgtgaatccttattcaagt |
29711894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 41 - 201
Target Start/End: Complemental strand, 15166742 - 15166582
Alignment:
| Q |
41 |
attagatccagcaagtccaatccaaattgcaaatgtgtggacccatataccaaaattgaatgatacacctatacatacatggaaccaatatgtcatgctt |
140 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||| |||||| ||||||| | |||| |||||||||| ||| ||||||||||||||||| |
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| T |
15166742 |
attagatccagcaagtccattccaaattgcaaatatgtggatccatatttcaaaattagaaaatacgcctatacatatatgagaccaatatgtcatgctt |
15166643 |
T |
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| Q |
141 |
tatacacagcataatattaaatcaaaatttaattattataatcgtgaatccttattcaagt |
201 |
Q |
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|||| | ||||||||| |||||| ||||| |||||||||||||||||||||||||| |
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| T |
15166642 |
catacgtgacgaaatattaaaccaaaatctaattcttataatcgtgaatccttattcaagt |
15166582 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 15171000 - 15170840
Alignment:
| Q |
41 |
attagatccagcaagtccaatccaaattgcaaatgtgtggacccatataccaaaattgaatgatacacctatacatacatggaacc--aatatgtcatgc |
138 |
Q |
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||||||||||| |||||||||||||||||||||| |||||||||| || | ||||| || |||| ||| |||||||||| ||| |||||||||||| |
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| T |
15171000 |
attagatccagtaagtccaatccaaattgcaaatatgtggacccaaatttcgaaattatatcatacgcctgtacatacatgagaccaaaatatgtcatgc |
15170901 |
T |
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| Q |
139 |
tttatacacagca-taatattaaatcaaaatttaattattataatcgtgaatccttattcaa |
199 |
Q |
| |
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|| |||||| ||| ||||||||| |||||||||||| |||||||||||||||||| ||||| |
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| T |
15170900 |
ttcatacac-gcagaaatattaaaccaaaatttaattcttataatcgtgaatccttgttcaa |
15170840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 41 - 183
Target Start/End: Original strand, 55807989 - 55808134
Alignment:
| Q |
41 |
attagatccagcaagtccaatccaaattgcaaatgtgtgg---acccatataccaaaattgaatgatacacctatacatacatggaaccaatatgtcatg |
137 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| ||||| ||||| | |||| ||| | |||| |||||||||||||| |||||||||||||| |
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| T |
55807989 |
attagatccagcaagtccaattcaaattgcaaatatgtggtggacccactttccaacattagaaaatacgcctatacatacatgagaccaatatgtcatg |
55808088 |
T |
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| Q |
138 |
ctttatacacagcat-aatattaaatcaaaatttaattattataatc |
183 |
Q |
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|||||||||| |||| ||||||||| |||||||||||| |||||||| |
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| T |
55808089 |
ctttatacac-gcataaatattaaaccaaaatttaattcttataatc |
55808134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 41 - 201
Target Start/End: Original strand, 55803401 - 55803564
Alignment:
| Q |
41 |
attagatccagcaagtccaatccaaattgcaaatgtgtgg---acccatataccaaaattgaatgatacacctatacatacatggaaccaatatgtcatg |
137 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||| ||| | | |||| ||| | |||| |||||||||||||| |||||||||||| | |
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| T |
55803401 |
attagatcgagcaagtccaatccaaattgcaaatatgtggtggacctaatttccaacattagaaaatacgcctatacatacatgagaccaatatgtcacg |
55803500 |
T |
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| Q |
138 |
ctttatacacagcataa-tattaaatcaaaatttaattattataatcgtgaatccttattcaagt |
201 |
Q |
| |
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||| |||||| ||| || ||||||| |||||||||||| ||||||||| ||||||||||||||| |
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| T |
55803501 |
cttcatacac-gcagaaatattaaaccaaaatttaattcttataatcgcaaatccttattcaagt |
55803564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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