View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14138_low_76 (Length: 205)

Name: NF14138_low_76
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14138_low_76
NF14138_low_76
[»] chr4 (2 HSPs)
chr4 (1-199)||(38014371-38014569)
chr4 (171-205)||(12506460-12506494)
[»] chr2 (1 HSPs)
chr2 (1-170)||(31413165-31413335)
[»] chr8 (4 HSPs)
chr8 (155-201)||(5662594-5662641)
chr8 (171-205)||(24788096-24788130)
chr8 (171-205)||(27541621-27541655)
chr8 (171-205)||(31100935-31100969)
[»] chr3 (5 HSPs)
chr3 (155-205)||(47763960-47764011)
chr3 (171-205)||(2549961-2549995)
chr3 (171-205)||(24761961-24761995)
chr3 (171-205)||(24815939-24815973)
chr3 (171-205)||(31685101-31685135)
[»] chr5 (2 HSPs)
chr5 (155-205)||(22004502-22004553)
chr5 (171-205)||(19085440-19085474)
[»] scaffold0157 (1 HSPs)
scaffold0157 (171-205)||(13983-14017)
[»] scaffold0045 (1 HSPs)
scaffold0045 (171-205)||(11697-11731)
[»] scaffold0035 (1 HSPs)
scaffold0035 (171-205)||(35087-35121)
[»] chr7 (1 HSPs)
chr7 (171-205)||(1262112-1262146)
[»] chr6 (1 HSPs)
chr6 (171-205)||(33045494-33045528)


Alignment Details
Target: chr4 (Bit Score: 183; Significance: 3e-99; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 38014569 - 38014371
Alignment:
Q  1 ccaatgtggttgaaccgtgcaagtcaaataacagtaaatgcaatcaacccagcattaacatctagcattgatgtgtgtaatcaagcgttaaaaagcaatc 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38014569 ccaatgtggttgaaccgtgcaagtcaaataacaataaatgcaatcaacccagcattaacatctagcattgatgtgtgtaatcaagcgttaaaaagcaatc 38014470  T
Q  101 aatggctcacatgttccaggcgcccaaatagattgatctaacggccataatagtttggcgcctaaaaatctaggtttaggttttgcaaagtcattagca 199  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38014469 aatggctgatatgttccaggcgcccaaatagattgatctaacggccataatagtttggcgcctaaaaatctaggtttaggttttgtaaagtcattagca 38014371  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 12506494 - 12506460
Alignment:
Q  171 taggtttaggttttgcaaagtcattagcaatgtta 205  Q
    |||||||||| ||||||||||||||||||||||||    
T  12506494 taggtttaggatttgcaaagtcattagcaatgtta 12506460  T

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Target: chr2 (Bit Score: 125; Significance: 1e-64; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 1 - 170
Target Start/End: Original strand, 31413165 - 31413335
Alignment:
Q  1 ccaatgtggttgaaccgtgcaagtcaaataacagtaaatgcaatcaacccagcattaacatctagcattgatgtg--tgtaatcaagcgttaaaaagcaa 98  Q
    |||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  31413165 ccaatgtggt-gaaccgtgcaagtcaaataagagtaaatgcaattaacccagcattaacatctagcattgatgtgtgtgtaatcaagcgttaaaaagcaa 31413263  T
Q  99 tcaatggctcacatgttccaggcgcccaaatagattgatctaacggccataatagtttggcgcctaaaaatc 170  Q
    ||||||||| | ||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||||    
T  31413264 tcaatggctgatatgttccaggcacccaaatagattgatctaacggccacaatattttggcgcctaaaaatc 31413335  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 201
Target Start/End: Complemental strand, 5662641 - 5662594
Alignment:
Q  155 ttggcgcctaaaaa-tctaggtttaggttttgcaaagtcattagcaat 201  Q
    |||||||||||||| |||||||||||| ||||||||||||||||||||    
T  5662641 ttggcgcctaaaaaatctaggtttagggtttgcaaagtcattagcaat 5662594  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 24788096 - 24788130
Alignment:
Q  171 taggtttaggttttgcaaagtcattagcaatgtta 205  Q
    |||||||||| ||||||||||||||||||||||||    
T  24788096 taggtttagggtttgcaaagtcattagcaatgtta 24788130  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 27541621 - 27541655
Alignment:
Q  171 taggtttaggttttgcaaagtcattagcaatgtta 205  Q
    |||||||||| ||||||||||||||||||||||||    
T  27541621 taggtttagggtttgcaaagtcattagcaatgtta 27541655  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 31100935 - 31100969
Alignment:
Q  171 taggtttaggttttgcaaagtcattagcaatgtta 205  Q
    |||||||||| ||||||||||||||||||||||||    
T  31100935 taggtttaggatttgcaaagtcattagcaatgtta 31100969  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 47763960 - 47764011
Alignment:
Q  155 ttggcgcctaaaaat-ctaggtttaggttttgcaaagtcattagcaatgtta 205  Q
    ||||||||||||||| |||| ||||||||||||||||| |||||||||||||    
T  47763960 ttggcgcctaaaaattctagatttaggttttgcaaagttattagcaatgtta 47764011  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 2549995 - 2549961
Alignment:
Q  171 taggtttaggttttgcaaagtcattagcaatgtta 205  Q
    |||||||||| ||||||||||||||||||||||||    
T  2549995 taggtttagggtttgcaaagtcattagcaatgtta 2549961  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 24761961 - 24761995
Alignment:
Q  171 taggtttaggttttgcaaagtcattagcaatgtta 205  Q
    |||||||||| ||||||||||||||||||||||||    
T  24761961 taggtttagggtttgcaaagtcattagcaatgtta 24761995  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 24815973 - 24815939
Alignment:
Q  171 taggtttaggttttgcaaagtcattagcaatgtta 205  Q
    |||||||||| ||||||||||||||||||||||||    
T  24815973 taggtttagggtttgcaaagtcattagcaatgtta 24815939  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 31685135 - 31685101
Alignment:
Q  171 taggtttaggttttgcaaagtcattagcaatgtta 205  Q
    |||||||||| ||||||||||||||||||||||||    
T  31685135 taggtttagggtttgcaaagtcattagcaatgtta 31685101  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 155 - 205
Target Start/End: Original strand, 22004502 - 22004553
Alignment:
Q  155 ttggcgcctaaaa-atctaggtttaggttttgcaaagtcattagcaatgtta 205  Q
    ||||||||||||  ||||||||||||| |||||||| |||||||||||||||    
T  22004502 ttggcgcctaaactatctaggtttagggtttgcaaaatcattagcaatgtta 22004553  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 19085440 - 19085474
Alignment:
Q  171 taggtttaggttttgcaaagtcattagcaatgtta 205  Q
    |||||||||| ||||||||||||||||||||||||    
T  19085440 taggtttagggtttgcaaagtcattagcaatgtta 19085474  T

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Target: scaffold0157 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 13983 - 14017
Alignment:
Q  171 taggtttaggttttgcaaagtcattagcaatgtta 205  Q
    |||||||||| ||||||||||||||||||||||||    
T  13983 taggtttaggatttgcaaagtcattagcaatgtta 14017  T

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Target: scaffold0045 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 11697 - 11731
Alignment:
Q  171 taggtttaggttttgcaaagtcattagcaatgtta 205  Q
    |||||||||| ||||||||||||||||||||||||    
T  11697 taggtttagggtttgcaaagtcattagcaatgtta 11731  T

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Target: scaffold0035 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 35121 - 35087
Alignment:
Q  171 taggtttaggttttgcaaagtcattagcaatgtta 205  Q
    |||||||||| ||||||||||||||||||||||||    
T  35121 taggtttagggtttgcaaagtcattagcaatgtta 35087  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Complemental strand, 1262146 - 1262112
Alignment:
Q  171 taggtttaggttttgcaaagtcattagcaatgtta 205  Q
    |||||||||| ||||||||||||||||||||||||    
T  1262146 taggtttagggtttgcaaagtcattagcaatgtta 1262112  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 205
Target Start/End: Original strand, 33045494 - 33045528
Alignment:
Q  171 taggtttaggttttgcaaagtcattagcaatgtta 205  Q
    |||||||||| ||||||||||||||||||||||||    
T  33045494 taggtttagggtttgcaaagtcattagcaatgtta 33045528  T

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