View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_low_8 (Length: 501)
Name: NF14138_low_8
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 490
Target Start/End: Complemental strand, 43051490 - 43051005
Alignment:
| Q |
18 |
tgatggcagcggcagataggtgatgtccggtgccatcaatatcacacatcaaatgttcatcaacgtaagtttgccacgacattttgtccttcaaaatttg |
117 |
Q |
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| T |
43051490 |
tgatggcagcggcagataggtggtgtccggtgccatcaatatcacacatcaaatgttcatcaacgtaagtttgccacgacattttgtccttcaaaatttg |
43051391 |
T |
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| Q |
118 |
ttccttttttcttcttgttgtttagtgttgttgtaatgtaatgt-----gattgtgaccttcaaatattgtttttaaataagggttggaatggaattgga |
212 |
Q |
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| T |
43051390 |
ttccttttttcttcttgttgtgtagtgttgttgtaatgtaatgtaatatgattgtgaccttcaaatattgtttttaaataagggttggaatggaattgga |
43051291 |
T |
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| Q |
213 |
tgatgggtgagtgatgatgcacgctttacctccattcaattgttgccactcatttaccttctccttcattttaggactcaactaactactctctctattt |
312 |
Q |
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| T |
43051290 |
tgatgggtgagtgatgatgcacgctttacctccattcaattgttgccactcatttaccttctccttcattttaggactcaactaactactctctctattt |
43051191 |
T |
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| Q |
313 |
actattcctattcttatctctctcccgaaatagattatagatcatcaacatgactattactcaataataa-agaaaaatatatgtattttgcttgttacc |
411 |
Q |
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| T |
43051190 |
actattcctattcttatctctctcccgaaatagattatagatcatcaacatgactattactcaataataataaaaaaatatgtgtattttgcttgttacc |
43051091 |
T |
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| Q |
412 |
taaaatgaagaatgatg-------tgcaccattctttctaactcttgcatacttgaaagaaatctatttttgctaagatatatatt |
490 |
Q |
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| T |
43051090 |
taaaatgaagaatgatgcgcaccattcaccattctttctaactcttgcatacttgaaagaaatctatttttgctaagatgtatatt |
43051005 |
T |
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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 35 - 104
Target Start/End: Original strand, 34173905 - 34173974
Alignment:
| Q |
35 |
aggtgatgtccggtgccatcaatatcacacatcaaatgttcatcaacgtaagtttgccacgacattttgt |
104 |
Q |
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|||||||| || |||||||| ||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
34173905 |
aggtgatgaccagtgccatcgatatcacacatcaaatgttcatccacataagtttgccacgacattttgt |
34173974 |
T |
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