View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14138_low_9 (Length: 495)
Name: NF14138_low_9
Description: NF14138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14138_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 21875626 - 21875151
Alignment:
| Q |
1 |
agaacatagatagtacgttaagaatgggaatgatgagcttgatggttgcacttaacttgatgcaatctgatgcagataaaaatttggctcatgatcatgc |
100 |
Q |
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| T |
21875626 |
agaacatagatagtacgttaagaatgggaatgatgagcttgatggttgcacttaacttgatgcaatctgatgcggataaaaatttggctcatgatcatgc |
21875527 |
T |
|
| Q |
101 |
acaagttgtgcctatgacactctttgtagctgttctttgcctatgtttggtcattggtcatttgcttgaagaaagtcgatggattaatgaatccattgtc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21875526 |
acaagttgtgcctatgacactctttgtagctgttctttgcttatgtttggtcattggtcatttgcttgaagaaagtcgatggattaatgaatccattgtc |
21875427 |
T |
|
| Q |
201 |
gccatttttgttgtaagacacaaataacctttaatttctttttcaatcattcttgtttgtgttatttcatgcattgtgtg-nnnnnnnactcggtattcg |
299 |
Q |
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|||||||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||||||||||||||| || ||||||||| |
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| T |
21875426 |
gccatttttgttgtaagacacaaataacctttgattt-tatttcaatcattcttgtttgtgttatttcatgcattgtgtgttttttttacccggtattcg |
21875328 |
T |
|
| Q |
300 |
gtccaatgaccgattaatatgaggggttcaatctcatcattcacatggcctgtttaaaccctgagtaaagctatgcatgaactagtccacctaaattgag |
399 |
Q |
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||||||| |||||||||||||| |||| |||||||||| | | | | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21875327 |
gtccaataaccgattaatatga-gggtccaatctcatcctgtttaaaccttctttaaaccctgagtaaagctatgcatgaactagtccacctaaattgag |
21875229 |
T |
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| Q |
400 |
atcaaacctgacacatttagaggagcacacctacgttaaatgtttttaattagtaaaa-ggtaacctggtgcactaat |
476 |
Q |
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||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
21875228 |
atcaaacctgacacattgagaggagcacacctacattaaatgtttttaattagtaaaagggtaacgtggtgcactaat |
21875151 |
T |
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