View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14139_high_1 (Length: 747)
Name: NF14139_high_1
Description: NF14139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14139_high_1 |
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| [»] scaffold0148 (3 HSPs) |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: scaffold0148 (Bit Score: 317; Significance: 1e-178; HSPs: 3)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 335 - 736
Target Start/End: Original strand, 27771 - 28186
Alignment:
| Q |
335 |
cctttttatccggccttcctgttttaatcatggttaaattcaagaaagccgtgccattttcagtacagaatgttgtttttctcctcgtacaatgtagtga |
434 |
Q |
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| T |
27771 |
cctttatatctggccttcctgttttaatcatggtcaagttcaagaacttcgtgtcattttcagtacagaatgttgtttttctcctcgtacaatgtcgtga |
27870 |
T |
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| Q |
435 |
agaatcttcctctccgtggttatcattgtagaatcctggtaaacatttgcaaacgctatcatcgtcattacagctagcaaagtttccacaagcattatat |
534 |
Q |
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| T |
27871 |
agaatcttcctctccctggttatcattgtagaatcctggtaaacatttgcaaacgctatcatcgtcattacagctagcaaagtttccacaagcattatat |
27970 |
T |
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| Q |
535 |
gttaaacatttgcttcttggctgcttccatataactggcaaatcatcttccacccactgtatcacacctgtggaattgaggaacaatcttttattgttat |
634 |
Q |
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| T |
27971 |
gttaaacatttgcttcttggctgcttccatataactagcaaatcatcttccacccactgtatcacacctgtggaattgaggaacaatcttttattgttat |
28070 |
T |
|
| Q |
635 |
actgtttgttacgaattactgacctgttccgtttttcaggtgaactgaatttgtt--------------caagaaaactgaagttggtcaacaaattata |
720 |
Q |
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| T |
28071 |
actgttcgttacgaattactgatctgttccgtttttcaggtgaactgaatttgtttgacgaattataaacaagaaaactgaagttggtcaacaaattata |
28170 |
T |
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| Q |
721 |
aacctcaaagctgatg |
736 |
Q |
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| T |
28171 |
aacctcaaagctgatg |
28186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 71 - 280
Target Start/End: Original strand, 27501 - 27710
Alignment:
| Q |
71 |
gaagaagagagaaatatgtctctaatttaatcatcatatgcatacctatgtctaatttatcaactaggataatgagtctacgatcatcatcccaactagt |
170 |
Q |
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| T |
27501 |
gaagaagagagaaatatgtctctaatttaatcatcatatgcatacctatgtctaatttatcaactaggataatgagtctacgatcatcatcccaactagt |
27600 |
T |
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| Q |
171 |
atactcttctttaagagtagttaaactttgtgtccagatccaacagtttgaaggaataagaccacgctgctgcttatcagggacctgaccatatgagtaa |
270 |
Q |
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| T |
27601 |
atactcttctttaagagtagttaaactgtgtgtccagatccaacagtttgaaggaataagaccacgctgctgcttatcagggacttgagcatatgagtaa |
27700 |
T |
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| Q |
271 |
gcctggcact |
280 |
Q |
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| T |
27701 |
gcctggcact |
27710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0148; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 27456 - 27493
Alignment:
| Q |
18 |
gaatcttcagaatcatgaatttatttctaattttatat |
55 |
Q |
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| T |
27456 |
gaattttcagaatcatgaatttgtttctaattttatat |
27493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 101; Significance: 1e-49; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 91 - 223
Target Start/End: Original strand, 2485 - 2617
Alignment:
| Q |
91 |
tctaatttaatcatcatatgcatacctatgtctaatttatcaactaggataatgagtctacgatcatcatcccaactagtatactcttctttaagagtag |
190 |
Q |
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| T |
2485 |
tctaatttaatcatcacatgcatacctacctctgatttatcaactaggacaatgagtctacgatcataatcccaattagtatactcttctttaagagtag |
2584 |
T |
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| Q |
191 |
ttaaactttgtgtccagatccaacagtttgaag |
223 |
Q |
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| T |
2585 |
ttaaactttgtgtccagatccaacaatttgaag |
2617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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