View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14139_high_2 (Length: 462)
Name: NF14139_high_2
Description: NF14139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14139_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 452
Target Start/End: Original strand, 43618935 - 43619369
Alignment:
| Q |
18 |
gaaagagcaaaacttatgatgaaatttgcagacctaattgatgaaaacatagaagagctagcggcacttgatgccattgatgcaggaaagttgtaccata |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43618935 |
gaaagagcaaaacttatgatgaaatttgcggacctaattgatgaaaacatagaagagctagcagcacttgatgccattgatgcaggaaagttgtaccata |
43619034 |
T |
|
| Q |
118 |
tgtgtaaggctcttgacattccctcagcagcaaatacacttcgttactatgcaggtgcagctgataaaattcatggagaggtattaaaagttgcaagaga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43619035 |
tgtgtaaggctcttgacattccctcagcagcaaatacacttcgttactatgcaggtgcagctgataaaattcatggagaggtattaaaagttgcaagaga |
43619134 |
T |
|
| Q |
218 |
gttccatgcttatacattgatggaaccaattggtgttgttggacacattattccttggaactttcccacttccctgttctttgtcaaggttagcccttgc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43619135 |
gttccatgcttatacattgatggaaccaattggtgttgttggacacattattccttggaactttcccacttccctgttctttgtcaaggttagcccttgc |
43619234 |
T |
|
| Q |
318 |
ttagctgctgggtgcaccatggtcgtcaaacctgctgagcaaacacctctatctgctttgttttatgctcatctagctaaattggtatgattcggtaaat |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43619235 |
ttagctgctgggtgcaccatggtcgtcaaacctgctgagcaaacacctctatctgctttgttttatgctcatctagctaaattggtatgattcggtaaat |
43619334 |
T |
|
| Q |
418 |
cattaatttctacttagcatcttatatcacctatg |
452 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
43619335 |
cattaatttctacttagcatcttatatcacctatg |
43619369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 33 - 397
Target Start/End: Original strand, 43626328 - 43626692
Alignment:
| Q |
33 |
atgatgaaatttgcagacctaattgatgaaaacatagaagagctagcggcacttgatgccattgatgcaggaaagttgtaccatatgtgtaaggctcttg |
132 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||| || | ||||| |||||||| || ||| ||||| ||| |||||| ||| |
|
|
| T |
43626328 |
atgatgaaatttgcagaactaattgatgaaaacatagaagaactagcaacattagatgcaattgatgctggcaaggtgtactttatcaacaaggcttttg |
43626427 |
T |
|
| Q |
133 |
acattccctcagcagcaaatacacttcgttactatgcaggtgcagctgataaaattcatggagaggtattaaaagttgcaagagagttccatgcttatac |
232 |
Q |
| |
|
| ||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||| | | | | |||||||| || || |
|
|
| T |
43626428 |
aaattccttcagcagcaaatacactacgttactatgcaggtgctgctgataaaattcatggtgaggtattaaaatcttctggccaattccatgcatacac |
43626527 |
T |
|
| Q |
233 |
attgatggaaccaattggtgttgttggacacattattccttggaactttcccacttccctgttctttgtcaaggttagcccttgcttagctgctgggtgc |
332 |
Q |
| |
|
| |||||||||||||||||||||| |||||||| ||||| ||||| ||||||| | ||||| ||| |||||||||| |||||||||||||||| |
|
|
| T |
43626528 |
actgatggaaccaattggtgttgtgggacacatcattccatggaatgctcccactatggttttcttcaccaaagttagcccttccttagctgctgggtgc |
43626627 |
T |
|
| Q |
333 |
accatggtcgtcaaacctgctgagcaaacacctctatctgctttgttttatgctcatctagctaa |
397 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
43626628 |
accatggttctcaaacctgctgaacaaacacctctttctgctttgttttatgcccatctagctaa |
43626692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 59; Significance: 8e-25; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 20 - 397
Target Start/End: Complemental strand, 32408749 - 32408372
Alignment:
| Q |
20 |
aagagcaaaacttatgatgaaatttgcagacctaattgatgaaaacatagaagagctagcggcacttgatgccattgatgcaggaaagttgtaccatatg |
119 |
Q |
| |
|
|||||||||| | ||| |||||| |||||| |||||||| ||||||||||||| |||| ||| | ||| | || ||||| ||||| | ||| | | |
|
|
| T |
32408749 |
aagagcaaaaataatgctgaaatgggcagacttaattgatcaaaacatagaagaaatagcagcattagatacaatagatgctggaaaactatacactttc |
32408650 |
T |
|
| Q |
120 |
tgtaaggctcttgacattccctcagcagcaaatacacttcgttactatgcaggtgcagctgataaaattcatggagaggtattaaaagttgcaagagagt |
219 |
Q |
| |
|
|| || ||| |||||||||| || |||||||| | | ||||||||||| ||||| || ||||||||||| || |||| |||||| ||| | |||| |
|
|
| T |
32408649 |
tgcaaagctgttgacattcctggagtagcaaatataatacgttactatgccggtgctgcggataaaattcacggcaaggttttaaaacctgctcgggagt |
32408550 |
T |
|
| Q |
220 |
tccatgcttatacattgatggaaccaattggtgttgttggacacattattccttggaactttcccacttccctgttctttgtcaaggttagcccttgc-t |
318 |
Q |
| |
|
| || || ||||| |||||||| ||||| ||||| ||||||||||||||||||||||| ||||| | | | |||| || |||||| || | ||| | |
|
|
| T |
32408549 |
tgcacgcatatactttgatggagccaatcggtgtcgttggacacattattccttggaattttcctagtactatgtttgctgctaaggtt-gctcctgctt |
32408451 |
T |
|
| Q |
319 |
tagctgctgggtgcaccatggtcgtcaaacctgctgagcaaacacctctatctgctttgttttatgctcatctagctaa |
397 |
Q |
| |
|
| |||||||| || || ||||| | || |||||||| ||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
32408450 |
tggctgctggttgtactatggttcttaagcctgctgaacaaacacctctctctgctttgttttatgctcatcttgctaa |
32408372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 367
Target Start/End: Original strand, 32433282 - 32433421
Alignment:
| Q |
228 |
tatacattgatggaaccaattggtgttgttggacacattattccttggaactttcccacttccctgttctttgtcaaggttagcccttgcttagctgctg |
327 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||| |||||||| || || ||| ||||||||| |||| | ||||| || ||||||| |
|
|
| T |
32433282 |
tatactttgatggaacctattggtgttgttggacacattataccttggaatttcccaactattatgttctttgctaaggctgctccttgtttggctgctg |
32433381 |
T |
|
| Q |
328 |
ggtgcaccatggtcgtcaaacctgctgagcaaacacctct |
367 |
Q |
| |
|
| || || ||||| | || |||||||||||||||||||| |
|
|
| T |
32433382 |
gttgtactatggttcttaagcctgctgagcaaacacctct |
32433421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University