View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14139_low_4 (Length: 384)
Name: NF14139_low_4
Description: NF14139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14139_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 21 - 378
Target Start/End: Original strand, 42678034 - 42678391
Alignment:
| Q |
21 |
cccttctttactgtttctggtgttgatgttagagttagagaatgaatagttgttagttaattaagttatgcttgtgcgttttaaattcaccacattaacc |
120 |
Q |
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| T |
42678034 |
cccttctttactgtttctggtgttgatgttagagttagagaatgaatagttgttagttaattaagttatgcttgtgcgttgtaaattcaccacattaacc |
42678133 |
T |
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| Q |
121 |
ccctcttttacacatgctgctgctagttgtataatgtttaaatattgctgagagaannnnnnnnattgggtggttaacattctttctcatcgtttcttgc |
220 |
Q |
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| T |
42678134 |
ccctcttttacacatgctgctgctagttgtttaatgtttaaatattgctgagagaattttttttattggtttgttaacattctttctcatcgtttcttgc |
42678233 |
T |
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| Q |
221 |
tcagaatttcaacttgtacctgattcaagaccacaatgataatgatgaaggaagagcctagttcaaaaccaatcatgatccgtaaagtgtggggatacaa |
320 |
Q |
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| T |
42678234 |
tcagaatttcaacttgtacctgattcaagaccacaatgataatgatgaaggaagaccctggttcaaaaccaatcatgatccgtaaagtgtggggatacaa |
42678333 |
T |
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| Q |
321 |
tttgtcttgcgaattcaagctcattagtcagttaattggtaaatacaatttcatctca |
378 |
Q |
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| T |
42678334 |
tttgtcttgcgaattcaagctcattagtcagttaattggtaaatacaatttcatctca |
42678391 |
T |
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