View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14139_low_5 (Length: 290)

Name: NF14139_low_5
Description: NF14139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14139_low_5
NF14139_low_5
[»] chr7 (20 HSPs)
chr7 (13-272)||(10494443-10494702)
chr7 (13-272)||(13333525-13333784)
chr7 (14-270)||(8667260-8667516)
chr7 (13-272)||(8654290-8654549)
chr7 (17-272)||(8659207-8659462)
chr7 (41-272)||(1301328-1301559)
chr7 (32-270)||(17260100-17260338)
chr7 (30-272)||(27830944-27831186)
chr7 (41-272)||(3147132-3147363)
chr7 (144-267)||(8545604-8545727)
chr7 (32-270)||(17267798-17268036)
chr7 (53-222)||(8646757-8646926)
chr7 (144-261)||(8570282-8570399)
chr7 (41-185)||(6789380-6789524)
chr7 (144-272)||(29581910-29582038)
chr7 (144-267)||(8576297-8576420)
chr7 (144-272)||(7877802-7877930)
chr7 (144-267)||(8382950-8383073)
chr7 (149-272)||(29577741-29577864)
chr7 (20-90)||(8616528-8616598)
[»] chr4 (4 HSPs)
chr4 (13-270)||(9335962-9336219)
chr4 (32-272)||(30775111-30775351)
chr4 (182-272)||(35132457-35132547)
chr4 (15-84)||(35132299-35132368)
[»] chr2 (9 HSPs)
chr2 (17-272)||(16657586-16657841)
chr2 (32-272)||(14703267-14703507)
chr2 (18-272)||(7542071-7542325)
chr2 (146-272)||(12234662-12234788)
chr2 (134-272)||(16662061-16662199)
chr2 (17-182)||(43625256-43625421)
chr2 (140-191)||(11999374-11999425)
chr2 (140-191)||(12245556-12245607)
chr2 (152-260)||(17666764-17666872)
[»] chr1 (3 HSPs)
chr1 (19-272)||(4678627-4678879)
chr1 (32-272)||(15594893-15595133)
chr1 (35-75)||(34467051-34467091)
[»] chr5 (1 HSPs)
chr5 (41-272)||(28219786-28220017)
[»] chr8 (1 HSPs)
chr8 (41-272)||(43744684-43744915)


Alignment Details
Target: chr7 (Bit Score: 260; Significance: 1e-145; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 10494702 - 10494443
Alignment:
13 aatattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacc 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10494702 aatattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacc 10494603  T
113 tcaacggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10494602 tcaacggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgt 10494503  T
213 tattcttctttttgaactcctcaacaaaataattcaccattctgttatcgaagtcctctc 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10494502 tattcttctttttgaactcctcaacaaaataattcaccattctgttatcgaagtcctctc 10494443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 13 - 272
Target Start/End: Complemental strand, 13333784 - 13333525
Alignment:
13 aatattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||     
13333784 aatattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatctact 13333685  T
113 tcaacggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgt 212  Q
    ||||| ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||    
13333684 tcaacagtggtgacaaaagaaaaggagagtatccttttttccctctcacaggcagttctcaacctccttaaggattttgggttcccactgatatcgacgt 13333585  T
213 tattcttctttttgaactcctcaacaaaataattcaccattctgttatcgaagtcctctc 272  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||    
13333584 tattcttctttttgaactcctcaacaaaatagttcaccattctgttatcgaagtcttctc 13333525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 8667260 - 8667516
Alignment:
14 atattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacct 113  Q
    ||||||||||||||  |||||||||| || |||| |||||||||||| |||||||| ||||||||| |||||||||||||| ||||||||||||| ||||    
8667260 atattcatacactcattgaaaaagtccatgttaagttcctcaaatttagcacgagtaattgatgaacaaaagtcgattcccgtaaataaagcatctacct 8667359  T
114 caacggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgtt 213  Q
    |||| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||  |||||||||||| ||    
8667360 caacagtggtaacaaaagcaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttgggttctgactgatgtccacttt 8667459  T
214 attcttctttttgaactcctcaacaaaataattcaccattctgttatcgaagtcctc 270  Q
    |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
8667460 attcttcttttttaactcctcaacaaaatagttcaccattctgttatcgaagtcctc 8667516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 13 - 272
Target Start/End: Original strand, 8654290 - 8654549
Alignment:
13 aatattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacc 112  Q
    |||||| ||||||||  |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||    
8654290 aatattgatacactcattgaaaaagtccatattaatttcctcaaatttagcacgagtgattgatgaagaaaagtcgattcccataaataaagcatctacc 8654389  T
113 tcaacggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgt 212  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || || || ||||| |    
8654390 tcaacagtggtgacaaaagtaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttgggttaccgctaatttccactt 8654489  T
213 tattcttctttttgaactcctcaacaaaataattcaccattctgttatcgaagtcctctc 272  Q
    |||||||||||||||||||||| ||||| || | ||||||||||||||| ||||| ||||    
8654490 tattcttctttttgaactcctctacaaagtagtacaccattctgttatcaaagtcttctc 8654549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 17 - 272
Target Start/End: Original strand, 8659207 - 8659462
Alignment:
17 ttcatacactcgatgaaaaag-tctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctca 115  Q
    ||||||||||| || |||||| || ||||| |||||||||||  |||||||||||||| ||||| | ||||| ||||||  |||||||| ||||||||||    
8659207 ttcatacactc-attaaaaagatccatattcatttcctcaaacctggcacgagtgattaatgaacagaagtctattccctgaaataaagaatcgacctca 8659305  T
116 acggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttat 215  Q
    || ||||||||||||| |||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||| ||||    
8659306 acagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacaggcagttctcaacctccttaaggattttgggttaccactaatgtccactttat 8659405  T
216 tcttctttttgaactcctcaacaaaataattcaccattctgttatcgaagtcctctc 272  Q
    ||||||||||||||||||| ||||| || |||||||||||| |||| ||||||||||    
8659406 tcttctttttgaactcctctacaaagtagttcaccattctgctatcaaagtcctctc 8659462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 41 - 272
Target Start/End: Original strand, 1301328 - 1301559
Alignment:
41 atattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaagaaaaagaga 140  Q
    ||||||||||||||||| ||||||||||||||| ||||| | ||||||||||||  |||||||| ||||||||||||||||||||| |||| ||||||||    
1301328 atattaatttcctcaaacttggcacgagtgattaatgaacagaagtcgattccctgaaataaagaatcgacctcaacggtggtgactaaagcaaaagaga 1301427  T
141 gtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactcctcaacaaa 240  Q
    || ||||||||||||||||||| ||| ||||||||||||||||||||||  | || ||||| |||||||| |||||||||||| |||||||||| |||||    
1301428 gtgtcctttttgccctctcacacgcaattctcaacctccttaaggatttctggttaccactaatgtccactttattcttctttctgaactcctctacaaa 1301527  T
241 ataattcaccattctgttatcgaagtcctctc 272  Q
     ||  |||||||||| ||||| ||||||||||    
1301528 gtagctcaccattctattatcaaagtcctctc 1301559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 32 - 270
Target Start/End: Original strand, 17260100 - 17260338
Alignment:
32 aaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaag 131  Q
    |||| ||| ||||| ||||| ||||| ||||||||||||||||| |||||||| |  |  ||| |||||||||| || ||||||||  |||| ||| | |    
17260100 aaaaggtccatattgatttcttcaaacttggcacgagtgattgacgaagaaaaattaacacccttaaataaagcgtctacctcaacattggtcacagagg 17260199  T
132 aaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactc 231  Q
     |||||| ||| ||||||||||  | ||||| |||||||||||||||||||||| |||||| |||||| | |||||||  || ||| |  |||||| |||    
17260200 caaaagaaagtgtcctttttgctttttcacatgcagttctcaacctccttaaggcttttgggttcccaataatgtccaattttttcgttcttttgatctc 17260299  T
232 ctcaacaaaataattcaccattctgttatcgaagtcctc 270  Q
    ||| |||||||| | ||||||||| ||||| ||||||||    
17260300 ctctacaaaatagtacaccattctattatcaaagtcctc 17260338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 30 - 272
Target Start/End: Complemental strand, 27831186 - 27830944
Alignment:
30 tgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaa 129  Q
    |||||| ||| ||||| ||||||||||| || |||||||||||   |||| | ||||| || |||  |||||| ||||| | |||||  || ||| |||     
27831186 tgaaaaggtccatattgatttcctcaaactttgcacgagtgatcattgaaaagaagtcaatgccctcaaataaggcatctatctcaatagtagtgtcaac 27831087  T
130 agaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaac 229  Q
    ||||||||||||| ||||||||||| |||||||    ||||||| |||||| |||| | |||| |||||||| ||||||||  | |||||||| ||||||    
27831086 agaaaaagagagtgtcctttttgccttctcacattaggttctcagcctcctcaaggctcttgggttcccactaatgtccactcttttcttcttcttgaac 27830987  T
230 tcctcaacaaaataattcaccattctgttatcgaagtcctctc 272  Q
     |||| |||||||| |||||||| || ||||| ||||||||||    
27830986 acctccacaaaatagttcaccatcctattatcaaagtcctctc 27830944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 272
Target Start/End: Original strand, 3147132 - 3147363
Alignment:
41 atattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaagaaaaagaga 140  Q
    ||||| ||||||||||| ||||||||||||||||||||| | ||||| | ||||  |||||||| ||| | ||||| ||||||||  | || |||||| |    
3147132 atattgatttcctcaaacttggcacgagtgattgatgaaaataagtcaaatccctgaaataaagaatctatctcaatggtggtgatgacagcaaaagata 3147231  T
141 gtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactcctcaacaaa 240  Q
    |||| | |||||| || ||||| || ||| ||||||||||||||| | |||  ||| |||| ||||| || || |||||||| || ||||||    ||||    
3147232 gtattcgttttgctctttcacacgccgttttcaacctccttaaggctcttgagttctcactaatgtctaccttgttcttcttcttaaactcccgtgcaaa 3147331  T
241 ataattcaccattctgttatcgaagtcctctc 272  Q
     || |||||||| || ||||| ||||||||||    
3147332 gtagttcaccatcctattatcaaagtcctctc 3147363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 144 - 267
Target Start/End: Original strand, 8545604 - 8545727
Alignment:
144 tcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactcctcaacaaaata 243  Q
    ||||||||||| ||||||||||||||||||||||||| |||| || ||| |||| ||| || ||| | || |||||| | ||||||||||  ||||| ||    
8545604 tcctttttgccttctcacaggcagttctcaacctcctcaaggcttctgggttccgactaatatcctcattgttcttcctcttgaactccttcacaaagta 8545703  T
244 attcaccattctgttatcgaagtc 267  Q
    |||||||||||||||||| |||||    
8545704 attcaccattctgttatcaaagtc 8545727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 32 - 270
Target Start/End: Original strand, 17267798 - 17268036
Alignment:
32 aaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaag 131  Q
    |||| ||| ||||| ||||||||||| ||||||||||||||||| |||||||| || |  ||| |||||||||| || ||||||||  |||| ||| | |    
17267798 aaaaggtccatattgatttcctcaaacttggcacgagtgattgacgaagaaaaatcaacacccttaaataaagcgtctacctcaacattggtcacagagg 17267897  T
132 aaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactc 231  Q
      ||||| ||| ||||||||||  | ||||| ||||||||||||||||| | || |||||| ||||||   || | ||  || || ||| ||||||  ||    
17267898 cgaaagaaagtgtcctttttgctttttcacatgcagttctcaacctcctcatggcttttgggttcccaacaattttcaatttttttttccttttgatttc 17267997  T
232 ctcaacaaaataattcaccattctgttatcgaagtcctc 270  Q
    |||||||||||| |  |||||||| ||||| ||||||||    
17267998 ctcaacaaaatagtataccattctattatcaaagtcctc 17268036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 222
Target Start/End: Original strand, 8646757 - 8646926
Alignment:
53 tcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaagaaaaagagagtatcctttttg 152  Q
    |||||||||||||||||||||||||||  |||||| || ||  ||||||||| ||| |  |||| |||||||  | ||| |||||| ||| |||||||||    
8646757 tcaaatttggcacgagtgattgatgaaataaagtcaatgccattaaataaagaatctaattcaatggtggtgcaagaagcaaaagatagtgtcctttttg 8646856  T
153 ccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctt 222  Q
    | ||||| || || ||||||||||||||||||| | |||  || ||| | |||||||| || ||||||||    
8646857 ctctctcgcatgccgttctcaacctccttaaggctcttgagtttccagtaatgtccaccttgttcttctt 8646926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 144 - 261
Target Start/End: Original strand, 8570282 - 8570399
Alignment:
144 tcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactcctcaacaaaata 243  Q
    ||||||||||||||||||| || ||||| |||||||| |||| |||||| |||| ||| || ||| |||| |||||||| ||||||| ||  ||||| |     
8570282 tcctttttgccctctcacaagctgttcttaacctcctcaaggcttttgggttcctactaatatcctcgttgttcttcttcttgaacttcttcacaaagtg 8570381  T
244 attcaccattctgttatc 261  Q
    | ||| ||||||||||||    
8570382 agtcaacattctgttatc 8570399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 185
Target Start/End: Original strand, 6789380 - 6789524
Alignment:
41 atattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaagaaaaagaga 140  Q
    ||||| ||||||||||| ||||| ||||| | |||||||   |||||||| |||  ||||||||  || |||||||  || ||||| | |  ||||||||    
6789380 atattgatttcctcaaacttggcccgagtaagtgatgaaatgaagtcgatgccctgaaataaagagtctacctcaatagtagtgacgacaacaaaagaga 6789479  T
141 gtatcctttttgccctctcacaggcagttctcaacctccttaagg 185  Q
    ||| |||||| ||||| ||||| |||||||||||||| |||||||    
6789480 gtacccttttggccctttcacacgcagttctcaaccttcttaagg 6789524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 272
Target Start/End: Complemental strand, 29582038 - 29581910
Alignment:
144 tcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactcctcaacaaaata 243  Q
    |||| |||||||||||||| || ||||||| | ||||||| | |||||| |||||||| |||||||  || |||||| | || ||||| |   |||| ||    
29582038 tcctctttgccctctcacaagctgttctcagcttccttaaagcttttgggttcccactaatgtccaaattgttcttcctcttcaactcattcgcaaagta 29581939  T
244 attcaccattctgttatcgaagtcctctc 272  Q
    ||||||||||| |||||| ||||||||||    
29581938 attcaccattcggttatcaaagtcctctc 29581910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 144 - 267
Target Start/End: Original strand, 8576297 - 8576420
Alignment:
144 tcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactcctcaacaaaata 243  Q
    ||||||||||| | ||||| |||||||||||||||||||||| ||||| |||| |||| || ||| | || | ||| ||  ||||||||| |||||| |     
8576297 tcctttttgccttttcacaagcagttctcaacctccttaaggcttttgaattctcactaatatcctctttgtacttgttcctgaactccttaacaaagtg 8576396  T
244 attcaccattctgttatcgaagtc 267  Q
    || ||||||| ||||||| |||||    
8576397 atccaccattatgttatcaaagtc 8576420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 272
Target Start/End: Complemental strand, 7877930 - 7877802
Alignment:
144 tcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactcctcaacaaaata 243  Q
    ||||||| ||||||||||| ||||||||||||||||| | ||   | || || ||||  |||||||| ||||||||| | || ||||||   || ||||     
7877930 tccttttagccctctcacatgcagttctcaacctcctaagggccctcgggtttccaccaatgtccactttattcttcctcttaaactccatcactaaatg 7877831  T
244 attcaccattctgttatcgaagtcctctc 272  Q
     |||| |||||||||||| ||||||||||    
7877830 gttcaacattctgttatcaaagtcctctc 7877802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 267
Target Start/End: Complemental strand, 8383073 - 8382950
Alignment:
144 tcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactcctcaacaaaata 243  Q
    |||||||||||||||| || || ||||| ||||| || |  |  ||||| |||||||| ||||||   |||| |||| | |||||||| |||||||| ||    
8383073 tcctttttgccctctcgcaagccgttcttaaccttctaagagcctttgggttcccactaatgtccttattatgcttcctcttgaactcgtcaacaaagta 8382974  T
244 attcaccattctgttatcgaagtc 267  Q
     ||||| ||||||||||| |||||    
8382973 cttcacgattctgttatctaagtc 8382950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 272
Target Start/End: Complemental strand, 29577864 - 29577741
Alignment:
149 tttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactcctcaacaaaataattca 248  Q
    |||||||||||||| |||||||||| | ||||||| | |||||| |||  ||| |||||||| || |||||| | || ||||| |  ||||| |   |||    
29577864 tttgccctctcacaagcagttctcagcttccttaaagcttttgggttcaaactaatgtccacattgttcttcctcttcaactcattcacaaagtggctca 29577765  T
249 ccattctgttatcgaagtcctctc 272  Q
    ||||| | ||||||||||||||||    
29577764 ccattttattatcgaagtcctctc 29577741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 8616528 - 8616598
Alignment:
20 atacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgat 90  Q
    ||||||||| | |||| ||| ||||| ||||||||||| ||  ||||||||||||||||||| || |||||    
8616528 atacactcgttaaaaaggtccatattgatttcctcaaacttaacacgagtgattgatgaagagaaatcgat 8616598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 170; Significance: 3e-91; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 9336219 - 9335962
Alignment:
13 aatattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacc 112  Q
    |||||||||||||||  |||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
9336219 aatattcatacactcattgaaaaagtccatgttaagttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatctacc 9336120  T
113 tcaacggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgt 212  Q
    ||||| ||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    |||||||||| |    
9336119 tcaacagtggtaacaaaagcaaaagacagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttgggttctgcttgatgtccactt 9336020  T
213 tattcttctttttgaactcctcaacaaaataattcaccattctgttatcgaagtcctc 270  Q
    ||||||||||||| ||||| || |||||||| || |||||||||||||| ||||||||    
9336019 tattcttcttttttaactcttccacaaaatagttaaccattctgttatcaaagtcctc 9335962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 272
Target Start/End: Original strand, 30775111 - 30775351
Alignment:
32 aaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaag 131  Q
    |||| ||| ||||| ||||||||||| ||| ||||||||||||||||||||||||| ||  |   |||||||  ||| | ||||||    |||| |||      
30775111 aaaaggtccatattgatttcctcaaacttgacacgagtgattgatgaagaaaagtcaatgtcttgaaataaattatctatctcaacaaatgtgagaaact 30775210  T
132 aaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactc 231  Q
      || |||||| ||||||||||| | ||||| ||||||||||||   || || | | ||||||||||  | ||||||||||| |||||| | || || ||    
30775211 tgaaggagagtgtcctttttgccttttcacatgcagttctcaactgtctcaaagctcttggattcccggtaatgtccacgttgttcttcgtcttaaattc 30775310  T
232 ctcaacaaaataattcaccattctgttatcgaagtcctctc 272  Q
    ||| ||||| ||||||| |||||||||||| ||||||||||    
30775311 ctctacaaagtaattcaacattctgttatcaaagtcctctc 30775351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 272
Target Start/End: Original strand, 35132457 - 35132547
Alignment:
182 aaggattttggattcccactgatgtccacgttattcttctttttgaactcctcaacaaaataattcaccattctgttatcgaagtcctctc 272  Q
    |||| ||||| ||||||||| ||||| || || |||||  | |||||||| |  ||||| || ||||||||||||||||| ||||||||||    
35132457 aaggcttttgaattcccactaatgtctactttgttctttctcttgaactcttgtacaaagtagttcaccattctgttatcaaagtcctctc 35132547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 35132299 - 35132368
Alignment:
15 tattcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaa 84  Q
    |||||||||||||  | |||| ||||  ||| ||||||||||| ||||| ||| ||||||||||||||||    
35132299 tattcatacactcattaaaaaggtctgcattcatttcctcaaacttggcgcgattgattgatgaagaaaa 35132368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 17 - 272
Target Start/End: Complemental strand, 16657841 - 16657586
Alignment:
17 ttcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaa 116  Q
    |||||||||||  ||||||  || ||||||||||||||||| |||||||| |||||||||||||||||||| ||||||  |||||||| ||| |||||||    
16657841 ttcatacactcattgaaaagatccatattaatttcctcaaacttggcacgggtgattgatgaagaaaagtcaattccctgaaataaagaatctacctcaa 16657742  T
117 cggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttatt 216  Q
    | ||||||||||||| |||||||||| |||| |||||||||||||| ||||||||||||||||| |||| | |||  |||||||| |||||||| |||||    
16657741 cagtggtgacaaaagcaaaagagagtgtcctctttgccctctcacatgcagttctcaacctcctcaaggctcttgagttcccacttatgtccaccttatt 16657642  T
217 cttctttttgaactcctcaacaaaataattcaccattctgttatcgaagtcctctc 272  Q
    ||||||||  |||||||| ||||| || |||||| |||||||||| ||||||||||    
16657641 cttcttttgaaactcctctacaaagtagttcaccgttctgttatcaaagtcctctc 16657586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 32 - 272
Target Start/End: Original strand, 14703267 - 14703507
Alignment:
32 aaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaag 131  Q
    |||||||| ||||| ||||| ||||| ||||| | | |||| |||||||||||||| || |    |||||||||||| |||||||  |||| |||||       
14703267 aaaaagtccatattcatttcttcaaacttggccctattgatcgatgaagaaaagtcaatgcattgaaataaagcatctacctcaatagtggcgacaactt 14703366  T
132 aaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactc 231  Q
      ||||| ||| | |||||||||||||| || || |||||||| |||||||||| ||||||||| ||||| |||||||   | || ||  | ||||||||    
14703367 ggaaagaaagtgttctttttgccctctcgcaagcggttctcaagctccttaaggcttttggatttccactaatgtccaatctgttttttctcttgaactc 14703466  T
232 ctcaacaaaataattcaccattctgttatcgaagtcctctc 272  Q
     | |||||| || ||||||||||||||||||||||||||||    
14703467 ttgaacaaagtagttcaccattctgttatcgaagtcctctc 14703507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 7542071 - 7542325
Alignment:
18 tcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaac 117  Q
    ||||||||||| | ||||  || ||||| || |||||||| ||||| | | |||| |||||||||||||| || ||   |||||||| ||| |||||||     
7542071 tcatacactcgttaaaaagatccatattcatctcctcaaacttggccctattgatcgatgaagaaaagtcaatgccttgaaataaagaatctacctcaat 7542170  T
118 ggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattc 217  Q
     ||||  |||| |   ||||| |||   ||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||| |||||||| || |||    
7542171 agtggcaacaacaaggaaagaaagtgatctttttgccctctcacaagcagttctcaacctcctcaaggcttttggattcccactaatgtccactttgttc 7542270  T
218 ttctttttgaactcctcaacaaaataattcaccattctgttatcgaagtcctctc 272  Q
    ||  | |||||||| |  ||||| || ||| ||||||| ||||| ||||| ||||    
7542271 tttctcttgaactcttgtacaaagtagttcgccattctattatcaaagtcttctc 7542325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 146 - 272
Target Start/End: Original strand, 12234662 - 12234788
Alignment:
146 ctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactcctcaacaaaataat 245  Q
    ||||||||||||||||| |||||||| |||||||| |||| ||||||||| ||||| |||||||| || |||||  | |||||||| | | |||  || |    
12234662 ctttttgccctctcacaagcagttcttaacctcctcaaggcttttggatttccactcatgtccacttttttctttctattgaactcttgagcaaggtagt 12234761  T
246 tcaccattctgttatcgaagtcctctc 272  Q
    | |||||||||||||| ||||||||||    
12234762 ttaccattctgttatcaaagtcctctc 12234788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 272
Target Start/End: Complemental strand, 16662199 - 16662061
Alignment:
134 aaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactcct 233  Q
    ||||||||| ||||||| ||| | ||||| | ||||||||||||||| |||| | ||||||||| | |||| ||||| || |||||| | || || || |    
16662199 aaagagagtgtccttttcgccttttcacaagaagttctcaacctcctcaaggctcttggattcctagtgatatccactttgttcttcctattaaattctt 16662100  T
234 caacaaaataattcaccattctgttatcgaagtcctctc 272  Q
      ||||| || |||| |||||||||||| ||||||||||    
16662099 tcacaaagtagttcaacattctgttatcaaagtcctctc 16662061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 43625256 - 43625421
Alignment:
17 ttcatacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaa 116  Q
    |||| ||||||| ||||||  || ||||| ||||| ||||||||||||||||||||||||||| | ||||| || ||    ||||||| ||| |||||||    
43625256 ttcaaacactcgttgaaaagatccatatttatttcatcaaatttggcacgagtgattgatgaaaagaagtcaataccacggaataaagaatctacctcaa 43625355  T
117 cggtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctcctta 182  Q
      ||| |||   ||| |||||| ||| |||||||| | ||||| || || ||||||||||| ||||    
43625356 tagtgctgaacgaagcaaaagacagtgtcctttttcctctctcgcatgccgttctcaaccttctta 43625421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 11999374 - 11999425
Alignment:
140 agtatcctttttgccctctcacaggcagttctcaacctccttaaggattttg 191  Q
    ||||| ||||||||||||||||| ||||||||||||||||| |||| |||||    
11999374 agtattctttttgccctctcacaagcagttctcaacctcctcaaggcttttg 11999425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 12245607 - 12245556
Alignment:
140 agtatcctttttgccctctcacaggcagttctcaacctccttaaggattttg 191  Q
    ||||| ||||||||||||||||| ||||||||||| ||||| |||| |||||    
12245607 agtattctttttgccctctcacaagcagttctcaatctcctcaaggcttttg 12245556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 152 - 260
Target Start/End: Complemental strand, 17666872 - 17666764
Alignment:
152 gccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactcctcaacaaaataattcacca 251  Q
    ||||||||||| ||||| | ||||||| | |  | | |||| || ||||||||||||  ||| |||||  |||||||||| | |||||| | ||||||||    
17666872 gccctctcacaagcagtccccaacctcataagagctcttgggttgccactgatgtccttgttgttctttcttttgaactcttgaacaaagtgattcacca 17666773  T
252 ttctgttat 260  Q
    |||||||||    
17666772 ttctgttat 17666764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 4678879 - 4678627
Alignment:
19 catacactcgatgaaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacg 118  Q
    |||||||||| |||||| ||| ||||||||||||||||| ||||||||||| || |||||||||||||| ||||||  |||||||| ||| || |||||     
4678879 catacactcgttgaaaaggtccatattaatttcctcaaacttggcacgagtaatagatgaagaaaagtctattccctgaaataaagaatctac-tcaaca 4678781  T
119 gtggtgacaaaagaaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattct 218  Q
    ||||||||||| |  ||||||||| |||| ||||||||||| ||||||||||||||||||||||||| |||||  |||  ||| |||||||| |||||||    
4678780 gtggtgacaaaggcgaaagagagtgtcctctttgccctctcgcaggcagttctcaacctccttaagggttttgcgttcttactaatgtccacattattct 4678681  T
219 tctttttgaactcctcaacaaaataattcaccattctgttatcgaagtcctctc 272  Q
    |||||||||||||||| ||||| || ||||||||||||||||| ||||||||||    
4678680 tctttttgaactcctctacaaagtagttcaccattctgttatcaaagtcctctc 4678627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 32 - 272
Target Start/End: Original strand, 15594893 - 15595133
Alignment:
32 aaaaagtctatattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaag 131  Q
    |||||||| || || ||||| ||||| |||| |||||| |  |||||| | ||||| || ||  ||||||||  ||| ||||||| ||| ||||||  ||    
15594893 aaaaagtccatgttgatttcttcaaacttggaacgagtaaccgatgaaaagaagtcaataccgttaaataaacaatctacctcaatggtagtgacagtag 15594992  T
132 aaaaagagagtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactc 231  Q
     ||||||||||| |||||||||||| || || ||||||||||| ||||| ||||   |||| |||||| | || ||||| || |||||| | ||||| ||    
15594993 taaaagagagtaccctttttgccctttcgcacgcagttctcaatctcctcaaggcccttgggttcccagtaatatccactttgttcttcgtcttgaattc 15595092  T
232 ctcaacaaaataattcaccattctgttatcgaagtcctctc 272  Q
    ||   |||| || || |||||||||||||| ||||||||||    
15595093 ctgcgcaaagtagttgaccattctgttatcaaagtcctctc 15595133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 35 - 75
Target Start/End: Complemental strand, 34467091 - 34467051
Alignment:
35 aagtctatattaatttcctcaaatttggcacgagtgattga 75  Q
    ||||| ||||| ||||||||||| |||||||||||||||||    
34467091 aagtccatattgatttcctcaaacttggcacgagtgattga 34467051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 41 - 272
Target Start/End: Original strand, 28219786 - 28220017
Alignment:
41 atattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaagaaaaagaga 140  Q
    ||||| ||||||||||| || |||||||| ||||||||| | || || || ||   |||||||| ||| ||||||| ||||| ||||| || |||||| |    
28219786 atattgatttcctcaaacttagcacgagtaattgatgaaaagaaatcaatgccttcaaataaagaatctacctcaatggtggcgacaacagcaaaagata 28219885  T
141 gtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactcctcaacaaa 240  Q
    || |||||||||| ||||  || || ||||||||||||||||||| | |||  || ||| | |||||||| || |||||||| || ||||||||  | ||    
28219886 gtgtcctttttgctctcttgcacgctgttctcaacctccttaaggctcttgagtttccagtaatgtccaccttgttcttcttcttaaactcctctgcgaa 28219985  T
241 ataattcaccattctgttatcgaagtcctctc 272  Q
     || |||||||| ||  |||| ||||||||||    
28219986 gtagttcaccatcctactatcaaagtcctctc 28220017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 41 - 272
Target Start/End: Original strand, 43744684 - 43744915
Alignment:
41 atattaatttcctcaaatttggcacgagtgattgatgaagaaaagtcgattcccataaataaagcatcgacctcaacggtggtgacaaaagaaaaagaga 140  Q
    ||||| ||||||||||| || | ||||||||||| || | | || || || |||  |||||||| ||| |||||||  |||||||||| || |||||| |    
43744684 atattgatttcctcaaacttagtacgagtgattgttgtaaagaaatcaatgccctcaaataaagaatctacctcaatagtggtgacaacagcaaaagata 43744783  T
141 gtatcctttttgccctctcacaggcagttctcaacctccttaaggattttggattcccactgatgtccacgttattcttctttttgaactcctcaacaaa 240  Q
     | |||||||||| || || || || ||||||||||||||||| | | |||| || ||| | |||||||| || |||||||| || ||||||||  | ||    
43744784 atgtcctttttgctctttcgcatgctgttctcaacctccttaatgctcttgggtttccagtaatgtccaccttgttcttcttcttaaactcctctgcgaa 43744883  T
241 ataattcaccattctgttatcgaagtcctctc 272  Q
     || |||||||| || ||||| || |||||||    
43744884 gtagttcaccatcctattatcaaaatcctctc 43744915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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