View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14139_low_7 (Length: 251)
Name: NF14139_low_7
Description: NF14139
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14139_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 117 - 229
Target Start/End: Original strand, 29648369 - 29648481
Alignment:
| Q |
117 |
ggtaccttataaagaggtgaccaaattatgttccttatcacacaaaggaagtgataacggcttgaccggtatataatgttgaaggggcatacaagtaata |
216 |
Q |
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| T |
29648369 |
ggtaccttataaagaggtgaccaaattatgttccttatcacacaaaggaagtgataacggcttgaccggtatataatgttgaaggggcatacaagtaata |
29648468 |
T |
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| Q |
217 |
gtaagaaggcctg |
229 |
Q |
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| T |
29648469 |
gtaagaaggcctg |
29648481 |
T |
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Target: chr8; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 29648249 - 29648335
Alignment:
| Q |
1 |
ccgccataaaaaagtccagcatcagaacctagggagaaacagaaaattcaatgagattatgaccaaaacattacatgattttagact |
87 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29648249 |
ccgccataaaaaagtccagcatcagaacctagggagaaacagaaaattcaatgagattatgaccaaaacaatacatgattttagact |
29648335 |
T |
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