View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1413_high_1 (Length: 908)
Name: NF1413_high_1
Description: NF1413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1413_high_1 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 825; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 825; E-Value: 0
Query Start/End: Original strand, 27 - 880
Target Start/End: Original strand, 27428339 - 27429192
Alignment:
| Q |
27 |
gatggaaacaaagaaagttccagaggtggtactaaattcagggaaaaagatgccaatgataggctttggaacaggaacaactcctcctcaacaaattatg |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27428339 |
gatggaaacaaagaaagttccagaggtggtactaaattcagggaaaaagatgccaatgataggctttggaacaggaacaactcctcctcaacaaattatg |
27428438 |
T |
|
| Q |
127 |
cttgatgctattgacattggctacagacattttgatactgctgctctttatggtactgaagaacctctaggccaagctgtatcaaaggctttagagctag |
226 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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|
| T |
27428439 |
cttgatgctattgacattggctacagacattttgatactgctgctctttatggtactgaagaacctctaggccaagctgtgtcaaaggctttagagctag |
27428538 |
T |
|
| Q |
227 |
gcctcgttaaaaatcgcgatgaactcttcattacttccaagttatggtgtactgatgctcaacatgaccttgttctcccagctctcaaaaccaccctcaa |
326 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27428539 |
gcctcgttaaaaatcgcgatgaactcttcattacttccaagttatggtgtactgatgctcaacatgaccttgttctcccagctctcaaaaccaccctcaa |
27428638 |
T |
|
| Q |
327 |
gcaagcataattttcttaaccttttttctacttctttctagtttgtgcattttattacttgcctaatattattgttttggnnnnnnnggattgaaatttt |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
27428639 |
gcaagcataattttcttaaccttttttctacttctttctagtttgtgcattttattacttgcctaatattattgttttggtttttttggattgaaatttt |
27428738 |
T |
|
| Q |
427 |
tagaaatctgggattggagtatgttgatctctatttgattcactggccagtaaggttgaaacaagatgctgaaagcttaaaatttaaaaaggaggatatg |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27428739 |
tagaaatctgggattggagtatgttgatctctatttgattcactggccagtaaggttgaaacaagatgctgaaagcttaaaatttaaaaaggaggatatg |
27428838 |
T |
|
| Q |
527 |
attccctttgatataaaaggaacatgggaagctatggaagaatgttatagattgggcctagcaaagtctattggtgtcagtaactttggtgtcaaaaagc |
626 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27428839 |
attccctttgatataaaaggaacatgggaagctatggaagaatgttatagattgggcctagcaaagtctattggtgtcagtaactttggtgtcaaaaagc |
27428938 |
T |
|
| Q |
627 |
tctccatactcttagaaaatgccgaaatcgctcctgcagttaatcaggtaaaagaatttagcactagttgatttgattcattttgacatatagatcaaat |
726 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27428939 |
tctccatactcttagaaaatgccgaaatcgctcctgcagttaatcaggtaaaagaatttagcactagttgatttgattcattttgacatatagatcaaat |
27429038 |
T |
|
| Q |
727 |
acacttaatcggttgcctaagtcacttcaaaatcgaaaagcatcagacatgtataaacgtatccgatactgatacatgtcagacacttccctatatgaaa |
826 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27429039 |
acacttaattggttgcctaagtcacttcaaaatcgaaaagcatcagacatgtataaacgtatccgatactgatacatgtcagacacttccctatatgaaa |
27429138 |
T |
|
| Q |
827 |
agtatccaataatttattctcattctttctagaaatatttccactgaaacttct |
880 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27429139 |
agtatccaataatttattctcattctttctagaaatatttccactgaaacttct |
27429192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 319; E-Value: 1e-179
Query Start/End: Original strand, 128 - 708
Target Start/End: Original strand, 27439974 - 27440552
Alignment:
| Q |
128 |
ttgatgctattgacattggctacagacattttgatactgctgctctttatggtactgaagaacctctaggccaagctgtatcaaaggctttagagctagg |
227 |
Q |
| |
|
||||||| ||| | || |||||||| ||||||||||||||| || | ||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |
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|
| T |
27439974 |
ttgatgccattaaaataggctacaggcattttgatactgcttctatctataatactgaagaacctctaggccaagctgtgtcaaaagctttagagctagg |
27440073 |
T |
|
| Q |
228 |
cctcgttaaaaatcgcgatgaactcttcattacttccaagttatggtgtactgatgctcaacatgaccttgttctcccagctctcaaaaccaccctcaag |
327 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||| |
|
|
| T |
27440074 |
cctcgttaaaaatcgcgatgaactgttcgttacttccaagttatggtgtactgatgctcaccatgaccttgttctcccagctctcaaatccactctcaag |
27440173 |
T |
|
| Q |
328 |
caagcataattttcttaacctttttt-ctacttctttctagtttgtgcattttattacttgcctaatattattgttttggnnnnnnnggattgaaatttt |
426 |
Q |
| |
|
||||||||||| |||||||||||||| || ||||||| |||||||| |||||||| || |||||||| ||||||||| ||||||||||||| |
|
|
| T |
27440174 |
caagcataattctcttaacctttttttcttcttcttttaagtttgtgtattttatt---tgtctaatattgttgttttggtttttt-ggattgaaatttt |
27440269 |
T |
|
| Q |
427 |
t-agaaatctgggattggagtatgttgatctctatttgattcactggccagtaaggttgaaacaagatgctgaaagcttaaaatttaaaaaggaggatat |
525 |
Q |
| |
|
| |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| | |||| || || |||||| ||||||| |
|
|
| T |
27440270 |
ttagaaatctgggattggggtatgtggatctctatttgattcactggccagtaaggttgaaacaagacgttgaaggccataactttaaaggtgaggatac |
27440369 |
T |
|
| Q |
526 |
gattccctttgatataaaaggaacatgggaagctatggaagaatgttatagattgggcctagcaaagtctattggtgtcagtaactttggtgtcaaaaag |
625 |
Q |
| |
|
||||| ||||| |||||||||||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| |
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|
| T |
27440370 |
aattccttttgacataaaaggaacatgggaatctatggaagattgttatagattgggcatagcaaagtctattggtgtcagcaactttggtatcaaaaag |
27440469 |
T |
|
| Q |
626 |
ctctccatactcttagaaaatgccgaaatcgctcctgcagttaatcaggtaaaagaatttagcactagttgatttgattcatt |
708 |
Q |
| |
|
|||||||| |||||||||||||||||||| |||||||||||||| |||||| | |||||||| |||| ||||||||||||||| |
|
|
| T |
27440470 |
ctctccatgctcttagaaaatgccgaaattgctcctgcagttaaccaggtatatgaatttagtactacttgatttgattcatt |
27440552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 128 - 676
Target Start/End: Original strand, 27442900 - 27443441
Alignment:
| Q |
128 |
ttgatgctattgacattggctacagacattttgatactgctgctctttatggtactgaagaacctctaggccaagctgtatcaaaggctttagagctagg |
227 |
Q |
| |
|
||||||| ||||| || |||||||| ||||||||||||||| || | ||| ||||||||||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
27442900 |
ttgatgccattgaaataggctacaggcattttgatactgcttctgtctataatactgaagaacctctaggccaagctgtgtcaaaagctttagagctagg |
27442999 |
T |
|
| Q |
228 |
cctcgttaaaaatcgcgatgaactcttcattacttccaagttatggtgtactgatgctcaacatgaccttgttctcccagctctcaaaaccaccctcaag |
327 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||| ||||| |
|
|
| T |
27443000 |
cctcgttaaaaatcgcgatgaactgttcgttacttccaagttatggtgtactgatgctcaccatgaccttgttctcccatctctcaaaactaccatcaag |
27443099 |
T |
|
| Q |
328 |
caagcataattttcttaa---ccttttttctacttctttctagtttgtgcattttattacttgcctaatattattgttttggnnnnnnnggattgaaatt |
424 |
Q |
| |
|
|||||||| || |||||| | ||||||| ||||||| |||||| |||||||||||| ||| | ||||| || || |||||||| |
|
|
| T |
27443100 |
caagcatatttctcttaacttctttttttccgcttcttttacgtttgttatttttattacttgtctacttttattttt-----------gggttgaaatt |
27443188 |
T |
|
| Q |
425 |
-tttagaaatctgggattggagtatgttgatctctatttgattcactggccagtaaggttgaaacaagatgctgaaagcttaaaatttaaaaaggaggat |
523 |
Q |
| |
|
| ||||| ||| ||||| ||||| ||||||||||||||||||| ||||| |||||||||||||||| |||| ||| || |||||| |||||| |
|
|
| T |
27443189 |
gtacagaaaactgaagttggactatgtggatctctatttgattcactttccagtgaggttgaaacaagatgttgaaggctataacattaaaagtgaggat |
27443288 |
T |
|
| Q |
524 |
atgattccctttgatataaaaggaacatgggaagctatggaagaatgttatagattgggcctagcaaagtctattggtgtcagtaactttggtgtcaaaa |
623 |
Q |
| |
|
|| ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||| ||||||||||||||||||| || ||||||||| |||||| |
|
|
| T |
27443289 |
ataattccttttgatataaaaggaacatgggaagctatggaatattgttatagattgggcttagcaaagtctattggtgttagcaactttggtatcaaaa |
27443388 |
T |
|
| Q |
624 |
agctctccatactcttagaaaatgccgaaatcgctcctgcagttaatcaggta |
676 |
Q |
| |
|
|||||||||| ||||| |||| |||| ||||| ||||||||||||||||||| |
|
|
| T |
27443389 |
agctctccatgctcttcgaaagtgccaaaatctatcctgcagttaatcaggta |
27443441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 27442781 - 27442853
Alignment:
| Q |
27 |
gatggaaacaaagaaagttccagaggtggtactaaattcagggaaaaagatgccaatgataggctttggaaca |
99 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
27442781 |
gatggaagcaaagaaagttccagaggtgatactaaattcagggaaaaagatgccaatgataggttttggaaca |
27442853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 518 - 581
Target Start/End: Original strand, 27418310 - 27418373
Alignment:
| Q |
518 |
gaggatatgattccctttgatataaaaggaacatgggaagctatggaagaatgttatagattgg |
581 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
27418310 |
gaggatatgattccctttgatataaaaggaacatgggaagctacggaagattgttatagattgg |
27418373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 27 - 89
Target Start/End: Original strand, 27439855 - 27439917
Alignment:
| Q |
27 |
gatggaaacaaagaaagttccagaggtggtactaaattcagggaaaaagatgccaatgatagg |
89 |
Q |
| |
|
|||||||| ||| ||||||||||||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
27439855 |
gatggaaataaacaaagttccagaggtgatactaaattcagggaaaaatatgccaatgatagg |
27439917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 1e-34; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 187 - 334
Target Start/End: Complemental strand, 26933586 - 26933439
Alignment:
| Q |
187 |
gaacctctaggccaagctgtatcaaaggctttagagctaggcctcgttaaaaatcgcgatgaactcttcattacttccaagttatggtgtactgatgctc |
286 |
Q |
| |
|
|||||||||||||||||||| ||||| ||| ||||||| || || | ||||||||| ||| | ||||||||||||||| ||||||| |||||||||| |
|
|
| T |
26933586 |
gaacctctaggccaagctgtgtcaaaagctctagagctcggacttataaaaaatcgcaatggggttttcattacttccaagctatggtgcactgatgctc |
26933487 |
T |
|
| Q |
287 |
aacatgaccttgttctcccagctctcaaaaccaccctcaagcaagcat |
334 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
26933486 |
accatgaccttgttctcaaagctctcaaaaccaccctcaagcaagcat |
26933439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 7e-33
Query Start/End: Original strand, 425 - 629
Target Start/End: Complemental strand, 26933364 - 26933160
Alignment:
| Q |
425 |
tttagaaatctgggattggagtatgttgatctctatttgattcactggccagtaaggttgaaacaagatgctgaaagcttaaaatttaaaaaggaggata |
524 |
Q |
| |
|
||||| |||||| | ||||||||||| |||||||| ||||||||||||||||| || |||||| |||||| |||| |||| || || | |||||| |
|
|
| T |
26933364 |
tttaggaatctgaggttggagtatgtagatctctacttgattcactggccagttagattgaaagaagatgttgaaggctttaacttcactggtgaggatg |
26933265 |
T |
|
| Q |
525 |
tgattccctttgatataaaaggaacatgggaagctatggaagaatgttatagattgggcctagcaaagtctattggtgtcagtaactttggtgtcaaaaa |
624 |
Q |
| |
|
||||||||||||| |||||| |||||||| ||| ||||||||| || | |||||| ||| |||| |||||||||||||| || |||||||| ||||||| |
|
|
| T |
26933264 |
tgattccctttgacataaaacgaacatggaaagttatggaagattgatttagattaggcttagccaagtctattggtgttagcaactttggcatcaaaaa |
26933165 |
T |
|
| Q |
625 |
gctct |
629 |
Q |
| |
|
||||| |
|
|
| T |
26933164 |
gctct |
26933160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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