View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1413_high_10 (Length: 350)
Name: NF1413_high_10
Description: NF1413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1413_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 295; Significance: 1e-166; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 11 - 333
Target Start/End: Complemental strand, 4265971 - 4265649
Alignment:
| Q |
11 |
caaaggggtgattctaattcagatacttcattttcaagctttctacataggtaagcccaaaatttgataaaagaagttgaagttttaccatctaaaacag |
110 |
Q |
| |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4265971 |
caaaggggtaattctaattcagatacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacag |
4265872 |
T |
|
| Q |
111 |
catgatgtgaagtaataccaattgaaaatccatagtttggaaaaacggtaacttgaagagccaaaacagaagcttgatcatgagaaatattcaagttagg |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4265871 |
catgatgtgaagtaataccaattgaaaatccatagtttggaaaaagagtaacttgaagagccaaaatagaagcttgatcatgagaaatattcaagttagg |
4265772 |
T |
|
| Q |
211 |
taaaagatcatgaatttgtttagcttcagtaagattcttacctgaaagatgattgaaatcagcatcagattcagctatggtaagtgaaagagtgtttccc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
4265771 |
taaaagatcatgaatttgtttagcttcagtaagattcttacctgaaagatgattgaaatcagcatcagattcagctatggtaagtgaaagagggtttccc |
4265672 |
T |
|
| Q |
311 |
ttaatgaatttgatgattggctt |
333 |
Q |
| |
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|| |||||||||||||||||||| |
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| T |
4265671 |
ttgatgaatttgatgattggctt |
4265649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 11 - 330
Target Start/End: Original strand, 4289752 - 4290071
Alignment:
| Q |
11 |
caaaggggtgattctaattcagatacttcattttcaagctttctacataggtaagcccaaaatttgataaaagaagttgaagttttaccatctaaaacag |
110 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4289752 |
caaaggggtgatactaattcagatacttcattttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacag |
4289851 |
T |
|
| Q |
111 |
catgatgtgaagtaataccaattgaaaatccatagtttggaaaaacggtaacttgaagagccaaaacagaagcttgatcatgagaaatattcaagttagg |
210 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4289852 |
catgatgtgaagtaataccaattgaaaatccatagtttggaaaaatggtaacttgaagagccaaaacagaagcttgatcatgagaaatattcaagttagg |
4289951 |
T |
|
| Q |
211 |
taaaagatcatgaatttgtttagcttcagtaagattcttacctgaaagatgattgaaatcagcatcagattcagctatggtaagtgaaagagtgtttccc |
310 |
Q |
| |
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||||||||||||||||||| ||||||||| |||||||||||| || | ||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4289952 |
taaaagatcatgaatttgtgtagcttcagaaagattcttaccagataaatgattgaaatcagcatgagattcagctatggtaagtgaaagagtgtttcct |
4290051 |
T |
|
| Q |
311 |
ttaatgaatttgatgattgg |
330 |
Q |
| |
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| |||||||| |||||||| |
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| T |
4290052 |
cttatgaatttaatgattgg |
4290071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 11 - 333
Target Start/End: Complemental strand, 4260425 - 4260103
Alignment:
| Q |
11 |
caaaggggtgattctaattcagatacttcattttcaagctttctacataggtaagcccaaaatttgataaaagaagttgaagttttaccatctaaaacag |
110 |
Q |
| |
|
||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4260425 |
caaaggggtaatactaattcagatacttcaatttcaagctttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacag |
4260326 |
T |
|
| Q |
111 |
catgatgtgaagtaataccaattgaaaatccatagtttggaaaaacggtaacttgaagagccaaaacagaagcttgatcatgagaaatattcaagttagg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4260325 |
catgatgtgaagtaataccaattgaaaatccatagtttggaaaaaaagtaacttgaagagccaaaaaagaagcttgatcatgagaaatattcaagttagg |
4260226 |
T |
|
| Q |
211 |
taaaagatcatgaatttgtttagcttcagtaagattcttacctgaaagatgattgaaatcagcatcagattcagctatggtaagtgaaagagtgtttccc |
310 |
Q |
| |
|
||||| ||||||||| ||| ||||||||| |||||||||||| || | ||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
4260225 |
taaaaaatcatgaatctgtgtagcttcagaaagattcttaccagagaaatgattgaaatcagcatgagattcagctacggtaagtgaaagagtgtttcct |
4260126 |
T |
|
| Q |
311 |
ttaatgaatttgatgattggctt |
333 |
Q |
| |
|
|| |||||||| ||||||||||| |
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| T |
4260125 |
ttgatgaatttaatgattggctt |
4260103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 330
Target Start/End: Original strand, 4298344 - 4298655
Alignment:
| Q |
19 |
tgattctaattcagatacttcattttcaagctttctacataggtaagcccaaaatttgataaaagaagttgaagttttaccatctaaaacagcatgatgt |
118 |
Q |
| |
|
||||||| ||||||||| ||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4298344 |
tgattctgattcagatatttcctttccaatatttctacataggtaagcccaagatttgataaaagaagttgaagttttaccatctaaaacagcatgatgt |
4298443 |
T |
|
| Q |
119 |
gaagtaataccaattgaaaatccatagtttggaaaaacggtaacttgaagagccaaaacagaagcttgatcatgagaaatattcaagttaggtaaaagat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
4298444 |
gaagtaataccaattgaaaatccatagtttggaaaaacggtaacttgaagagccaaaacataagcttgatcatgagaaatattcaagttaggtaaaagat |
4298543 |
T |
|
| Q |
219 |
catgaatttgtttagcttcagtaagattcttacctgaaagatgattgaaatcagcatcagattcagctatggtaagtgaaagagtgtttcccttaatgaa |
318 |
Q |
| |
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||||||||||| ||||||||| | |||||||||| || |||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||| | ||| |
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| T |
4298544 |
catgaatttgtgtagcttcagaaggattcttaccagatagataattgaaatcagaatcagattcagctatggtaagtgaaagagtgtttctcttgaagaa |
4298643 |
T |
|
| Q |
319 |
tttgatgattgg |
330 |
Q |
| |
|
|||||||||||| |
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| T |
4298644 |
tttgatgattgg |
4298655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 98 - 282
Target Start/End: Original strand, 4285109 - 4285293
Alignment:
| Q |
98 |
ccatctaaaacagcatgatgtgaagtaataccaattgaaaatccatagtttggaaaaacggtaacttgaagagccaaaacagaagcttgatcatgagaaa |
197 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||| |
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|
| T |
4285109 |
ccatctaaaacagcatgatgtgaagtaatgcccattgaaaatccatagtttggaaaaacagtaacttgaagagccaaaacagtagcttgatcatgtgaaa |
4285208 |
T |
|
| Q |
198 |
tattcaagttaggtaaaagatcatgaatttgtttagcttcagtaagattcttacctgaaagatgattgaaatcagcatcagattc |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||| | |||||||||| | || | |||||||||| |||||| |||||| |
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|
| T |
4285209 |
tattcaagttaggtaaaagatcatgaatttgtgtggcttctgaaagattcttagcagataaatgattgaaagcagcatgagattc |
4285293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 4285054 - 4285111
Alignment:
| Q |
12 |
aaaggggtgattctaattcagatacttcattttcaagctttctacataggtaagccca |
69 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
4285054 |
aaaggggtgattctaattcagaaacttcattttcaagctttctacataggtaagccca |
4285111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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