View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1413_high_7 (Length: 394)
Name: NF1413_high_7
Description: NF1413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1413_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 25 - 277
Target Start/End: Original strand, 5784396 - 5784650
Alignment:
| Q |
25 |
taattaattatatagggtgacgatcgataaccgtatgtatcacattttctatacaataaagttgcttttaaaattcttgtaactatggctcagatagtaa |
124 |
Q |
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| T |
5784396 |
taattaattatatagggtgacgatcgataaccgtatgtatcacattttctatacaataaagttgcttttaaaattcttgtaactatggctcagatagtaa |
5784495 |
T |
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| Q |
125 |
aaagctcaaggtatattcaaaacaacaacaatacctcaaagttatatatgttgagatgtaagttcgaaccttcaaattctcatttattggtatttaaggt |
224 |
Q |
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| T |
5784496 |
aaagctcaaggtatattcaaaacaacaacaatacctcaaagt--tatatgttgagatgtaagtttgaaccttcaaattctcatttattggtatttaaggt |
5784593 |
T |
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| Q |
225 |
gtatgagtt----tcgatgctagattcattataaaattgattctaacaaatcattat |
277 |
Q |
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| T |
5784594 |
gtatgagtttcgatcgatgctattttcattataaaattgattctaacaaattattat |
5784650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 286 - 385
Target Start/End: Original strand, 5784702 - 5784802
Alignment:
| Q |
286 |
ttgttaccttgaatggtaccgttaatgtacaccccaaatgcattatt-acctttgaatcaaagatcgagtttttattttcttttccaaataacctaagta |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
5784702 |
ttgttaccttgaatggtaccgttaatgtacaccccaaatgtattatttacctttgaatcaaagatcgagtttttattttcttttccaaataatccaagta |
5784801 |
T |
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| Q |
385 |
t |
385 |
Q |
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| T |
5784802 |
t |
5784802 |
T |
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