View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1413_high_8 (Length: 385)
Name: NF1413_high_8
Description: NF1413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1413_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 178; Significance: 6e-96; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 18 - 230
Target Start/End: Complemental strand, 885896 - 885683
Alignment:
| Q |
18 |
ccaaggatgataagcaatgtgatggggaaattatagaaataagtagcagaatgagtaatgtagctagtggaatatttcccttcatatccatcttcacaat |
117 |
Q |
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| T |
885896 |
ccaaggatgataaggaatgtgatggggaaattatagaaataagtagcaaaaggaggagtgtagctagtggaatatttcccttcatatccatcttcacaat |
885797 |
T |
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| Q |
118 |
gtttttagaaatcaaatgaaatcgtataatgtgg-aaaacacatgaggatggcttatgcttatatagggaactttaacttaagagtaatgtatataatat |
216 |
Q |
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| T |
885796 |
gtttttagaaatcaaatgaaatcgtgtaatgtggaaaaacacatgaggatggcttatgcttatatagggaaatttaacttaagagtaatgtatataatat |
885697 |
T |
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| Q |
217 |
taactataataaga |
230 |
Q |
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| T |
885696 |
taactataataaga |
885683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 283 - 381
Target Start/End: Complemental strand, 885426 - 885328
Alignment:
| Q |
283 |
ctaacaattttaagaatgaaaatagtcgattataattgaaatgtatgaaattgtaaaaatatacattaaatttatctagtaaatattattgaaaaatta |
381 |
Q |
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| T |
885426 |
ctaacaattttaggaatgaaaatagtcgattataattgaaatgtatgaaattgtaaaaatatacattaaatttatctagtaaatattattgaaaaatta |
885328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 316 - 381
Target Start/End: Complemental strand, 883251 - 883186
Alignment:
| Q |
316 |
aattgaaatgtatgaaattgtaaaaatatacattaaatttatctagtaaatattattgaaaaatta |
381 |
Q |
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| T |
883251 |
aattgaaatgtatgaaatagtaaaaatatacattaaatttatctaataaatattattgaaaaatta |
883186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 31936520 - 31936561
Alignment:
| Q |
98 |
ttcatatccatcttcacaatgtttttagaaatcaaatgaaat |
139 |
Q |
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| T |
31936520 |
ttcatatctatcttcacaatgtttttagaaatcaaattaaat |
31936561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 272 - 357
Target Start/End: Original strand, 31938633 - 31938717
Alignment:
| Q |
272 |
tatactaaaaactaacaattttaagaatgaaaatagtcgattataattgaaatgtatgaaattg-taaaaatatacattaaatttat |
357 |
Q |
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| T |
31938633 |
tatactaaaaattaacaattagaa--atgaaaatagtcgattatgattgaaacgcatgaaatagttaaaaaaatgcattaaatttat |
31938717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 31899408 - 31899336
Alignment:
| Q |
18 |
ccaaggatgataagcaatgtgatggggaaattatagaaataagtagcagaatgagtaatgtagctagtggaat |
90 |
Q |
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| T |
31899408 |
ccaaggatgataaggaatgtgatggggaaattatagaaatgagtagcagaaggaggagtgtagctagtggaat |
31899336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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