View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1413_low_10 (Length: 406)
Name: NF1413_low_10
Description: NF1413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1413_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 396
Target Start/End: Complemental strand, 4948122 - 4947719
Alignment:
| Q |
17 |
agttgtttcatgtacttggtagcatctcccaacacagaagctttgtccatctgcacataccataatattgaatacattaattcaatgcttagtacaatat |
116 |
Q |
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| T |
4948122 |
agttgtttcatgtacttggtagcatctcccaacacagaagctttgtccatctgcacataccataatattgaatacattaattcaatgcttagtacaatat |
4948023 |
T |
|
| Q |
117 |
aaatattgcaattgatattcaggtttaacttatctaggttaagcttgcatgtgtgtgtttattcactaattagtaaaattagttgcacccagtgtaagta |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4948022 |
aaatattgcaattgatattcaggtttaacttatctaggttaagcttgcatgtgtgtgtttattcactaattagtaaaattagttgcacccagtgtaagta |
4947923 |
T |
|
| Q |
217 |
gaacatta-------------ctcacaactataaaatttaaattatnnnnnnnnttagatacc-----------taatttgatcatagaaaatgatcaat |
292 |
Q |
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|||||||| ||||||||||||||||||||||||| || ||| || |||||||||||||||||||||||||| |
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| T |
4947922 |
gaacattactcacaaacattactcacaactataaaatttaaattataaattttttttgatcccgagttgatccctaatttgatcatagaaaatgatcaat |
4947823 |
T |
|
| Q |
293 |
aaaaacaatttttagtttctgagtaaagaaaatggaacaatttaatcccgagnnnnnnnatgtctactctttgggtccgagaaataaaagctgtcctatt |
392 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
4947822 |
aaaaacaatttttagtttctgagaaaagaaaatggaacaatttaatccctagtttttttatgtctattctttgggtccgagaaataaaagctgtcctatt |
4947723 |
T |
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| Q |
393 |
tctt |
396 |
Q |
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|||| |
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| T |
4947722 |
tctt |
4947719 |
T |
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