View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1413_low_12 (Length: 386)

Name: NF1413_low_12
Description: NF1413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1413_low_12
NF1413_low_12
[»] chr3 (4 HSPs)
chr3 (10-370)||(39336748-39337108)
chr3 (282-351)||(24255452-24255521)
chr3 (281-337)||(43838490-43838546)
chr3 (281-337)||(47944547-47944603)
[»] chr4 (4 HSPs)
chr4 (279-366)||(39331135-39331221)
chr4 (279-337)||(7616951-7617009)
chr4 (281-313)||(32934162-32934194)
chr4 (281-341)||(46804807-46804867)
[»] chr2 (3 HSPs)
chr2 (281-351)||(6788470-6788540)
chr2 (279-348)||(19206489-19206558)
chr2 (281-313)||(29488709-29488741)
[»] chr6 (6 HSPs)
chr6 (279-351)||(31803957-31804029)
chr6 (280-352)||(9762596-9762668)
chr6 (279-338)||(25085082-25085141)
chr6 (279-313)||(30000002-30000036)
chr6 (279-313)||(31315304-31315338)
chr6 (281-313)||(12291653-12291685)
[»] chr7 (1 HSPs)
chr7 (279-337)||(8929501-8929559)
[»] chr5 (5 HSPs)
chr5 (281-370)||(23159081-23159170)
chr5 (284-340)||(37853448-37853504)
chr5 (279-341)||(42525235-42525297)
chr5 (285-357)||(14461750-14461822)
chr5 (285-313)||(19342538-19342566)
[»] chr1 (4 HSPs)
chr1 (281-337)||(51849552-51849608)
chr1 (281-366)||(33747321-33747406)
chr1 (284-313)||(45679559-45679588)
chr1 (281-313)||(50155562-50155594)
[»] scaffold0687 (1 HSPs)
scaffold0687 (281-340)||(1629-1688)
[»] chr8 (5 HSPs)
chr8 (281-340)||(7603945-7604004)
chr8 (290-341)||(14523937-14523988)
chr8 (279-336)||(4586800-4586857)
chr8 (249-313)||(6915537-6915599)
chr8 (290-370)||(44362619-44362699)


Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 10 - 370
Target Start/End: Complemental strand, 39337108 - 39336748
Alignment:
Q  10 cagaacctgtgccatgtgatgtgggggtcttgatcgcaaattttcataaaatattattttatggtaaatgtgttaaaagtgatatatggagaaatgttat 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39337108 cagaacatgtgccatgtgatgtgggggtcttgatcgcaaattttcataaaatattattttatgggaaatgtgttaaaagtgatatatggagaaatgttat 39337009  T
Q  110 ctagaaatcttttgttgtccaaaactctataaataaatatcatatgaatattattttctgttttcaatttattatttctatagcttttattatcacatca 209  Q
    |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39337008 ctagaaattttttgttgtctaaaactctataaataaatatcatatgaatattattttctgttttcaatttattatttctatatcttttattatcacatca 39336909  T
Q  210 atagttataaattggagtaacagtcacttttgatctttgaatgtgtaatgactaagcacaaaagtccaattaatgtattaaaattttaaaatagtttttg 309  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||||||    
T  39336908 atagttataaattggagtaaccgtcacttttgatctttgaatgtgtaattactaaccacaaaagtccaattaatatattaaaattttaaaatagtttttg 39336809  T
Q  310 attgctgacttcgttagtcagaatagtctctgctgttaaaatgcttcatttatattgacat 370  Q
    ||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  39336808 attgcggacttcgttagtcagaataatctctgctgttaaaatgcttcatttatattgacat 39336748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 351
Target Start/End: Complemental strand, 24255521 - 24255452
Alignment:
Q  282 atgtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtctctgctgttaaaat 351  Q
    ||||||||||||||||||||| ||||||||| || | ||||||| | | |||||| | || |||||||||    
T  24255521 atgtattaaaattttaaaataatttttgatttctcatttcgttaattaaaatagtttttgatgttaaaat 24255452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 337
Target Start/End: Original strand, 43838490 - 43838546
Alignment:
Q  281 aatgtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtc 337  Q
    |||||||||||||||||||||||| |||||||    |||| |||||||| |||||||    
T  43838490 aatgtattaaaattttaaaatagtctttgattttgtactttgttagtcataatagtc 43838546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 47944603 - 47944547
Alignment:
Q  281 aatgtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtc 337  Q
    |||||||| ||||||||||||||| ||||||||   ||||||||| ||| |||||||    
T  47944603 aatgtattgaaattttaaaatagtctttgattgtgcacttcgttaatcaaaatagtc 47944547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 279 - 366
Target Start/End: Complemental strand, 39331221 - 39331135
Alignment:
Q  279 ttaatgtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtctctgctgttaaaatgcttcatttatattg 366  Q
    |||||||||| ||||||||||||||||||||||||   |||||||| |||| |||||||  || | ||||||||||||||| ||||||    
T  39331221 ttaatgtattgaaattttaaaatagtttttgattgtgcacttcgtttgtca-aatagtccatgatattaaaatgcttcattaatattg 39331135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 337
Target Start/End: Complemental strand, 7617009 - 7616951
Alignment:
Q  279 ttaatgtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtc 337  Q
    ||||||||||||||||||||||||||||||||||    |||| |||||||| |||||||    
T  7617009 ttaatgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaaatagtc 7616951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 313
Target Start/End: Complemental strand, 32934194 - 32934162
Alignment:
Q  281 aatgtattaaaattttaaaatagtttttgattg 313  Q
    ||||||| |||||||||||||||||||||||||    
T  32934194 aatgtatcaaaattttaaaatagtttttgattg 32934162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 341
Target Start/End: Original strand, 46804807 - 46804867
Alignment:
Q  281 aatgtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtctctg 341  Q
    ||||||| |||||||||||||||| | ||||||   |||| |||||||| |||||||||||    
T  46804807 aatgtatcaaaattttaaaatagtctctgattgtacactttgttagtcaaaatagtctctg 46804867  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 281 - 351
Target Start/End: Complemental strand, 6788540 - 6788470
Alignment:
Q  281 aatgtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtctctgctgttaaaat 351  Q
    ||||||| |||||||||||||||||| ||||||   |||| |||||||||||||||||||| || ||||||    
T  6788540 aatgtatcaaaattttaaaatagtttctgattgtgcactttgttagtcagaatagtctctgatgctaaaat 6788470  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 348
Target Start/End: Complemental strand, 19206558 - 19206489
Alignment:
Q  279 ttaatgtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtctctgctgttaa 348  Q
    ||||||||| |||||||||||||||||| |||||    |||| |||||||| |||| |||||| ||||||    
T  19206558 ttaatgtatcaaaattttaaaatagtttctgattatgcactttgttagtcaaaatattctctgatgttaa 19206489  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 29488709 - 29488741
Alignment:
Q  281 aatgtattaaaattttaaaatagtttttgattg 313  Q
    ||||||| |||||||||||||||||||||||||    
T  29488709 aatgtatcaaaattttaaaatagtttttgattg 29488741  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 351
Target Start/End: Original strand, 31803957 - 31804029
Alignment:
Q  279 ttaatgtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtctctgctgttaaaat 351  Q
    ||||||||| |||||||||||||| |||||||||| | | ||||||||||| || |||| ||| |||||||||    
T  31803957 ttaatgtatcaaaattttaaaataatttttgattgttcatttcgttagtcaaaacagtccctgatgttaaaat 31804029  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 352
Target Start/End: Complemental strand, 9762668 - 9762596
Alignment:
Q  280 taatgtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtctctgctgttaaaatg 352  Q
    |||||||| |||||||||||||||||||||||||   |||   ||||||| ||| |||||| |||||||||||    
T  9762668 taatgtatcaaaattttaaaatagtttttgattgtgcactatattagtcaaaatggtctcttctgttaaaatg 9762596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 279 - 338
Target Start/End: Complemental strand, 25085141 - 25085082
Alignment:
Q  279 ttaatgtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtct 338  Q
    ||||||||| |||||||||||||| ||||||||||   |||| |||||||| ||||||||    
T  25085141 ttaatgtatcaaaattttaaaatactttttgattgtgcactttgttagtcaaaatagtct 25085082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 30000036 - 30000002
Alignment:
Q  279 ttaatgtattaaaattttaaaatagtttttgattg 313  Q
    |||| ||||||||||||||||||||||||||||||    
T  30000036 ttaaggtattaaaattttaaaatagtttttgattg 30000002  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 31315338 - 31315304
Alignment:
Q  279 ttaatgtattaaaattttaaaatagtttttgattg 313  Q
    |||||||||||||||||||||||||| ||||||||    
T  31315338 ttaatgtattaaaattttaaaatagtctttgattg 31315304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 313
Target Start/End: Complemental strand, 12291685 - 12291653
Alignment:
Q  281 aatgtattaaaattttaaaatagtttttgattg 313  Q
    |||||||||||||||||||||||| ||||||||    
T  12291685 aatgtattaaaattttaaaatagtctttgattg 12291653  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 337
Target Start/End: Original strand, 8929501 - 8929559
Alignment:
Q  279 ttaatgtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtc 337  Q
    ||||||||||||||||||||||||||||||||||    |||| |||||||| |||||||    
T  8929501 ttaatgtattaaaattttaaaatagtttttgattttgcactttgttagtcaaaatagtc 8929559  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 281 - 370
Target Start/End: Original strand, 23159081 - 23159170
Alignment:
Q  281 aatgtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtctctgctgttaaaatgcttcatttatattgacat 370  Q
    ||||||| |||||||||||||||| ||||||||   | ||||||||| | ||||||| ||| |||| ||||| |||||| ||||| ||||    
T  23159081 aatgtatcaaaattttaaaatagtatttgattgtgcatttcgttagtaaaaatagtccctgatgttgaaatgtttcattaatattaacat 23159170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 284 - 340
Target Start/End: Complemental strand, 37853504 - 37853448
Alignment:
Q  284 gtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtctct 340  Q
    ||||||||||||||||||||||||| ||||   |||| |||||||| ||||||||||    
T  37853504 gtattaaaattttaaaatagtttttaattgtatactttgttagtcaaaatagtctct 37853448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 341
Target Start/End: Original strand, 42525235 - 42525297
Alignment:
Q  279 ttaatgtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtctctg 341  Q
    ||||||||| | |||||||||||| ||||||||||  |||||| ||||||| |||||| ||||    
T  42525235 ttaatgtatcataattttaaaataatttttgattgtggacttcattagtcaaaatagtttctg 42525297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 357
Target Start/End: Complemental strand, 14461822 - 14461750
Alignment:
Q  285 tattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtctctgctgttaaaatgcttca 357  Q
    |||| ||||||||||||||| | ||||||   ||||||||||||| ||||||| | | | |||||||||||||    
T  14461822 tattcaaattttaaaatagtctctgattgtacacttcgttagtcaaaatagtccccgatattaaaatgcttca 14461750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 19342566 - 19342538
Alignment:
Q  285 tattaaaattttaaaatagtttttgattg 313  Q
    |||||||||||||||||||||||||||||    
T  19342566 tattaaaattttaaaatagtttttgattg 19342538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 337
Target Start/End: Complemental strand, 51849608 - 51849552
Alignment:
Q  281 aatgtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtc 337  Q
    |||||||||||||||||||||||||| ||||||   ||||| ||||||| |||||||    
T  51849608 aatgtattaaaattttaaaatagtttgtgattgtacacttctttagtcaaaatagtc 51849552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 281 - 366
Target Start/End: Original strand, 33747321 - 33747406
Alignment:
Q  281 aatgtattaaaattttaaaatagtttttgattgctg-acttcgttagtcagaatagtctctgctgttaaaatgcttcatttatattg 366  Q
    |||||||  |||||| |||| ||| ||||||| ||| ||||||||||||| ||||||||||| | |||||||||| |||| ||||||    
T  33747321 aatgtatcgaaatttcaaaacagtatttgatt-ctgcacttcgttagtcaaaatagtctctgatattaaaatgctccattaatattg 33747406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 313
Target Start/End: Original strand, 45679559 - 45679588
Alignment:
Q  284 gtattaaaattttaaaatagtttttgattg 313  Q
    ||||||||||||||||||||||||||||||    
T  45679559 gtattaaaattttaaaatagtttttgattg 45679588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 50155562 - 50155594
Alignment:
Q  281 aatgtattaaaattttaaaatagtttttgattg 313  Q
    ||||||| |||||||||||||||||||||||||    
T  50155562 aatgtatcaaaattttaaaatagtttttgattg 50155594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0687 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0687
Description:

Target: scaffold0687; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 340
Target Start/End: Original strand, 1629 - 1688
Alignment:
Q  281 aatgtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtctct 340  Q
    ||||||| |||||||||||||| ||||||||||   |||||||| |||| ||||||||||    
T  1629 aatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctct 1688  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 281 - 340
Target Start/End: Original strand, 7603945 - 7604004
Alignment:
Q  281 aatgtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagtctct 340  Q
    ||||||| |||||||||||||| ||||||||||   |||||||| |||| ||||||||||    
T  7603945 aatgtatcaaaattttaaaataatttttgattgtgcacttcgttggtcaaaatagtctct 7604004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 341
Target Start/End: Complemental strand, 14523988 - 14523937
Alignment:
Q  290 aaattttaaaatagtttttgattgctgacttcgttagtcagaatagtctctg 341  Q
    |||||| ||||||||| ||||||| | ||||||||||||| |||||||||||    
T  14523988 aaatttcaaaatagttcttgattgttcacttcgttagtcataatagtctctg 14523937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 4586800 - 4586857
Alignment:
Q  279 ttaatgtattaaaattttaaaatagtttttgattgctgacttcgttagtcagaatagt 336  Q
    |||||||||||||||||||||||||| | |||||    ||||||||||||| ||||||    
T  4586800 ttaatgtattaaaattttaaaatagtctatgattttgcacttcgttagtcaaaatagt 4586857  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 6915599 - 6915537
Alignment:
Q  249 aatgtgtaatgactaagcacaaaagtccaattaatgtattaaaattttaaaatagtttttgattg 313  Q
    |||||||||| | ||| ||||| |||||  ||||||||| |||||||||||||| ||||||||||    
T  6915599 aatgtgtaataagtaatcacaatagtcc--ttaatgtatcaaaattttaaaataatttttgattg 6915537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 370
Target Start/End: Complemental strand, 44362699 - 44362619
Alignment:
Q  290 aaattttaaaatagtttttgattgctgacttcgttagtcagaatagtctctgctgttaaaatgcttcatttatattgacat 370  Q
    ||||||||||||||||| ||||||   | ||||||||||| |||||||| |  |||||||||  |||||| ||| ||||||    
T  44362699 aaattttaaaatagtttctgattgtgtaattcgttagtcaaaatagtctataatgttaaaatatttcattaatactgacat 44362619  T

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