View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1413_low_14 (Length: 375)
Name: NF1413_low_14
Description: NF1413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1413_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 37 - 359
Target Start/End: Original strand, 42084029 - 42084353
Alignment:
| Q |
37 |
catgacgaattcatttgagaaaattgagagagaaaaaacacaaccatgttaacagatacagaaaattctcataaacgaaataaagaatataaccttaaat |
136 |
Q |
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| T |
42084029 |
catgacgaattcatttgagaaaattgagagagaaaaaacacaaccatgttaacagatacagaaaattctcataaacgaaacaaagaatataaccttaaat |
42084128 |
T |
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| Q |
137 |
tctcttttgagacgatcaacaatggtttcaagatgcaattctcccgttccttgaatgatcgtccggtcctctttatcttgggatacgcggaaagaaggg- |
235 |
Q |
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| T |
42084129 |
tctcttttgagacgatcaacaatggtttcaagatgcaattctcccgttccttgaatgatcgtccggtcctctttatcttgggatacgcggaaagaagggt |
42084228 |
T |
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| Q |
236 |
-ttcctctgcaagcttgattaaaccagcttccatcttctccatgtcagctttagttttgggttcaattgcaatcttaataacaggaacagggaagtccat |
334 |
Q |
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| T |
42084229 |
cttcctctgcaagcttgattaaaccagcttccatcttctccatgtcagctttagttttgggttcaattgcaatcttaataacatgaacagggaagtccat |
42084328 |
T |
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| Q |
335 |
ctgatcaagcacgcatggacccttg |
359 |
Q |
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| T |
42084329 |
ctgatcaagcacgaatggacccttg |
42084353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 58 - 347
Target Start/End: Original strand, 42087755 - 42088051
Alignment:
| Q |
58 |
aattgagagaga-aaaaacacaaccatgttaacagatacagaaaa-ttctcataaacgaaataaagaatataaccttaaattctcttttgagacgatcaa |
155 |
Q |
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|||||||||||| ||||||||| ||||||||||||||| ||||| |||| | |||| |||||| || |||||||||| ||||||||||||||||||||| |
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| T |
42087755 |
aattgagagagagaaaaacacagccatgttaacagatatcgaaaaattcttaaaaaccaaataatgattataaccttatattctcttttgagacgatcaa |
42087854 |
T |
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| Q |
156 |
caatggtttcaagatgcaattctcccgttccttgaatgatcgtccggt---cctctttatcttgggatacgcggaaagaaggg--ttcctctgcaagctt |
250 |
Q |
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| T |
42087855 |
caatgatttcaagatgcaattctcccattccttcaatcactgtctgatttatctcttcatcacgggagaagtggaaagaagggtcttcttgtgcaagctt |
42087954 |
T |
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| Q |
251 |
gattaaaccagcttccatcttctccatgtcagctttagttttgggttcaattgcaatcttaataacaggaacagggaagtccatctgatcaagcacg |
347 |
Q |
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| T |
42087955 |
gactaaaccagctgccatcttgtcaatatcagctttagttttgggttcaattgcaatcttaatcacaggatcagggaagtccatccgctcaagcacg |
42088051 |
T |
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