View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1413_low_15 (Length: 357)
Name: NF1413_low_15
Description: NF1413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1413_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 77 - 342
Target Start/End: Complemental strand, 27724605 - 27724348
Alignment:
| Q |
77 |
caaataacagtgacccgttaaggatgctccaacagatattggacaaactgttataccatctaacctaactcatacaaaaccgatttataaggcgaggact |
176 |
Q |
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| T |
27724605 |
caaatagcagtgacccgttaaggatgctccaacagatattggacaaactgttataccatctaacctaactcatacaaaaccgatttataaggcgaggact |
27724506 |
T |
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| Q |
177 |
gtccaccacttataaatacattttcatgtcaaatatgatctaatgtgcgactcttagcaagattcgagtgaataaaaaattcagtcactaaattttagag |
276 |
Q |
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| T |
27724505 |
gtccaccacttataaatacattttcatgtcaaatatgatctaatgtgcgactcttagcaagattcgagtgaataaaaaattcagtcactaaattcgagtg |
27724406 |
T |
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| Q |
277 |
actaaactggtaattgattcagattttcttactctgattgagtaggctttccaagaggagagaggt |
342 |
Q |
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| T |
27724405 |
aataaa--------agattccgattttcttactctgattgagtaggctttccaagaggagagaggt |
27724348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 27724694 - 27724631
Alignment:
| Q |
15 |
aaagaaataatgaaagcaactatagttagtttttcatttgatttcaaggccagcagactggaca |
78 |
Q |
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| T |
27724694 |
aaagaaataatgaaagcaactatagttagtttttcatttgatttcaagtccagcagactggaca |
27724631 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 200
Target Start/End: Complemental strand, 4356049 - 4355998
Alignment:
| Q |
149 |
tacaaaaccgatttataaggcgaggactgtccaccacttataaatacatttt |
200 |
Q |
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| T |
4356049 |
tacaaaaccggtttgtaaggcgaggaatgtctcccacttataaatacatttt |
4355998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 40282750 - 40282701
Alignment:
| Q |
143 |
aactcatacaaaaccgatttataaggcgaggactgtccaccacttataaa |
192 |
Q |
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| T |
40282750 |
aactcctagaaaaccgacttataaggtgaggactgtccgccacttataaa |
40282701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 202
Target Start/End: Complemental strand, 22127033 - 22126980
Alignment:
| Q |
149 |
tacaaaaccgatttataaggcgaggactgtccaccacttataaatacattttca |
202 |
Q |
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| T |
22127033 |
tacaaaatcggtttgtaaggtgaggactgcccaccacttataaacacattttca |
22126980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Original strand, 36936329 - 36936362
Alignment:
| Q |
171 |
aggactgtccaccacttataaatacattttcatg |
204 |
Q |
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| T |
36936329 |
aggactgtccaccacttataaacacattttcatg |
36936362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 40496946 - 40496995
Alignment:
| Q |
151 |
caaaaccgatttataaggcgaggactgtccaccacttataaatacatttt |
200 |
Q |
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||||||||| |||||||||||| |||| || ||||||||||| ||||||| |
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| T |
40496946 |
caaaaccgacttataaggcgagaactgcccgccacttataaacacatttt |
40496995 |
T |
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