View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1413_low_18 (Length: 317)

Name: NF1413_low_18
Description: NF1413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1413_low_18
NF1413_low_18
[»] chr7 (10 HSPs)
chr7 (24-92)||(7812922-7812990)
chr7 (91-170)||(7813124-7813203)
chr7 (224-308)||(7813204-7813293)
chr7 (95-216)||(29540890-29541010)
chr7 (95-171)||(29693515-29693591)
chr7 (95-174)||(1464424-1464504)
chr7 (95-174)||(714548-714627)
chr7 (95-165)||(9246331-9246401)
chr7 (148-242)||(9334349-9334444)
chr7 (95-168)||(22701973-22702046)
[»] chr2 (5 HSPs)
chr2 (90-238)||(17822688-17822837)
chr2 (98-216)||(17873343-17873460)
chr2 (95-174)||(18921846-18921925)
chr2 (95-221)||(31554249-31554375)
chr2 (95-177)||(17827695-17827772)
[»] chr8 (5 HSPs)
chr8 (95-177)||(37371408-37371490)
chr8 (95-170)||(3554643-3554718)
chr8 (95-171)||(18608127-18608203)
chr8 (123-216)||(7370977-7371066)
chr8 (141-221)||(12101828-12101907)
[»] chr4 (5 HSPs)
chr4 (95-177)||(54983469-54983551)
chr4 (95-167)||(42381638-42381710)
chr4 (95-174)||(42398256-42398335)
chr4 (107-174)||(23693162-23693229)
chr4 (95-174)||(54197053-54197132)
[»] chr6 (1 HSPs)
chr6 (95-172)||(4965339-4965416)
[»] scaffold1993 (1 HSPs)
scaffold1993 (95-174)||(239-318)
[»] chr1 (4 HSPs)
chr1 (96-164)||(33476043-33476111)
chr1 (113-177)||(43019982-43020046)
chr1 (121-174)||(44065125-44065178)
chr1 (90-167)||(48420667-48420744)
[»] chr3 (4 HSPs)
chr3 (97-172)||(297897-297971)
chr3 (115-174)||(21967893-21967952)
chr3 (115-174)||(21990329-21990388)
chr3 (90-174)||(21082931-21083015)
[»] scaffold0013 (1 HSPs)
scaffold0013 (141-177)||(101838-101874)
[»] chr5 (1 HSPs)
chr5 (142-174)||(30840897-30840929)


Alignment Details
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 92
Target Start/End: Original strand, 7812922 - 7812990
Alignment:
Q  24 tcattccctttccgagcggtcatcaattttcaagatatttgggtagttcaggagaaatttacattgatt 92  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  7812922 tcattccctttccgagcggtcatcaatttccaagatatttgggtagttcaggagaaatttacattgatt 7812990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 91 - 170
Target Start/End: Original strand, 7813124 - 7813203
Alignment:
Q  91 ttgttaaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaa 170  Q
    ||||||||||||||| ||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7813124 ttgttaaataatttcgttagatgctttgacaataatttctacaaaaattcatgtacgaataatttccattaatatttaaa 7813203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 224 - 308
Target Start/End: Original strand, 7813204 - 7813293
Alignment:
Q  224 gcggtagaaagaacggacatacgga-----tatgccatcaattaaagtatatattatgcaataaaaaagattcttaaaggagttgatgat 308  Q
    |||||||||||||||||||||||||     |||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||    
T  7813204 gcggtagaaagaacggacatacggacatggtatgccatcaattaaagtatgtattatgcaataaaaaagattcttaatggagttcatgat 7813293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 216
Target Start/End: Complemental strand, 29541010 - 29540890
Alignment:
Q  95 taaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaattgtagtaagaaaatatacaat 194  Q
    ||||||||||| |||||| |||||| |||||||| || ||||    |||||| ||||||||| |||||||||||||||||||| | | ||| |||||||     
T  29541010 taaataatttcattatatactttgacaataatttgtagataacccgatgtacaaataatttctattaatatttaaaaattgtaatca-aaattatacaaa 29540912  T
Q  195 caaacttaacaaaatatacaca 216  Q
    ||||| ||| ||||||||||||    
T  29540911 caaacataataaaatatacaca 29540890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 29693515 - 29693591
Alignment:
Q  95 taaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaa 171  Q
    ||||||||||| | |||||||||||||||||||| || ||||||| ||||| ||||| |||  ||||||||||||||    
T  29693515 taaataatttcgtcatatgctttgataataatttatagataaattgatgtatgaatagttttgattaatatttaaaa 29693591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 95 - 174
Target Start/End: Original strand, 1464424 - 1464504
Alignment:
Q  95 taaataatttctttatatgctttgataataatttctacataaattcatgtacgaataa-tttccattaatatttaaaaatt 174  Q
    ||||| ||||| ||||||||||||| |||||||| || ||||||| |||||| ||||| ||| |||||||||||| |||||    
T  1464424 taaattatttcattatatgctttgacaataatttgtagataaattgatgtacaaataatttttcattaatatttataaatt 1464504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 714627 - 714548
Alignment:
Q  95 taaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaatt 174  Q
    ||||||||||| | ||||| ||||| || ||||| || ||||||  ||||| ||||||||| ||||||||||||||||||    
T  714627 taaataatttcgtaatatgttttgacaacaatttttagataaatcgatgtatgaataattttcattaatatttaaaaatt 714548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 9246331 - 9246401
Alignment:
Q  95 taaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatat 165  Q
    ||||||||||  ||||||||||||| |||||||| || ||||||  ||| ||| |||| ||||||||||||    
T  9246331 taaataattttgttatatgctttgacaataatttgtagataaatcgatgaacggataaattccattaatat 9246401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 242
Target Start/End: Original strand, 9334349 - 9334444
Alignment:
Q  148 aataatttccattaatatttaaaaattgtagtaagaaaatatacaatcaaacttaacaaaatatacacat--gttagcgcggtagaaagaacggaca 242  Q
    ||||||||||||||||||||||||||| || | | ||| ||||||| ||||| ||| ||||||  | |||  ||||| |||||||||||| ||||||    
T  9334349 aataatttccattaatatttaaaaattttaatca-aaattatacaaacaaacataataaaataatcccatgcgttagtgcggtagaaagagcggaca 9334444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 22701973 - 22702046
Alignment:
Q  95 taaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatattta 168  Q
    ||||||||||| |||||| |||||| || ||||| || ||||||  |||||| ||||||||  |||||||||||    
T  22701973 taaataatttcgttatatcctttgacaagaatttgtaaataaatcgatgtacaaataatttaaattaatattta 22702046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 238
Target Start/End: Original strand, 17822688 - 17822837
Alignment:
Q  90 attgttaaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaattgtagtaagaaaatat 189  Q
    |||| ||||| ||||| ||||||||||||| |||||||| || ||||||  |||||| |||||||| ||||||||||||||||||| | ||| |||||||    
T  17822688 attgataaattatttcgttatatgctttgacaataatttgtagataaatagatgtacaaataattttcattaatatttaaaaattgaaataa-aaaatat 17822786  T
Q  190 acaatcaaacttaacaaaatat--acacatgttagcgcggtagaaagaacg 238  Q
    |||| ||||  ||| |||||||  ||||| |||||| ||||| ||||||||    
T  17822787 acaaacaaatataataaaatatccacacacgttagcacggtaaaaagaacg 17822837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 216
Target Start/End: Original strand, 17873343 - 17873460
Alignment:
Q  98 ataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaattgtagtaagaaaatatacaatcaa 197  Q
    |||||||| |||||||||  || |||||||| || ||||||  || ||| |||||||||||||||||||| ||||||||| | | ||| ||||||| |||    
T  17873343 ataatttcgttatatgctccgacaataatttgtatataaatcgatttacaaataatttccattaatatttcaaaattgtaatca-aaattatacaaacaa 17873441  T
Q  198 acttaacaaaatatacaca 216  Q
    || ||| ||||| ||||||    
T  17873442 acataataaaatttacaca 17873460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 18921925 - 18921846
Alignment:
Q  95 taaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaatt 174  Q
    ||||||||||  ||||||| |||||||||||||| || ||||||  |||||   |||||||  |||||||||||||||||    
T  18921925 taaataattttgttatatgttttgataataatttatagataaatcaatgtatacataatttttattaatatttaaaaatt 18921846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 221
Target Start/End: Complemental strand, 31554375 - 31554249
Alignment:
Q  95 taaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaa-ttgtagtaagaaaatatacaa 193  Q
    ||||||||||  |||| || ||||| |||||||| || ||||| | ||||||||||| ||| |||||||||| ||||| || || | | ||| |||||||    
T  31554375 taaataattttgttatttgttttgacaataatttatagataaactgatgtacgaatagttttcattaatattaaaaaaattataatca-aaattatacaa 31554277  T
Q  194 tcaaacttaacaaaatatacacatgtta 221  Q
      |||| ||| |||||||||||||||||    
T  31554276 ataaacataataaaatatacacatgtta 31554249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 17827695 - 17827772
Alignment:
Q  95 taaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaattgta 177  Q
    ||||||||||| ||||||| ||||| |||||||| ||     ||  ||||| |||||||||| ||||||||||||||||||||    
T  17827695 taaataatttcgttatatgttttgacaataatttgta-----atcgatgtaggaataatttcgattaatatttaaaaattgta 17827772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 37371408 - 37371490
Alignment:
Q  95 taaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaattgta 177  Q
    ||||||||||| ||||||| ||||| |||||||| || ||||||  |||||||||||||||| ||||||||||||||||||||    
T  37371408 taaataatttcgttatatgttttgacaataatttatagataaatcgatgtacgaataatttctattaatatttaaaaattgta 37371490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 95 - 170
Target Start/End: Original strand, 3554643 - 3554718
Alignment:
Q  95 taaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaa 170  Q
    ||||||||||| |||||| |||||| |||||||| || ||||||  | ||||||||||||||||||||||||||||    
T  3554643 taaataatttcgttatatactttgacaataatttgtagataaatcgacgtacgaataatttccattaatatttaaa 3554718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 18608203 - 18608127
Alignment:
Q  95 taaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaa 171  Q
    ||||||||||| |||||| |||||| |||||||| || ||||||| |||||| |||||||| ||| |||||||||||    
T  18608203 taaataatttcgttatatactttgacaataatttgtagataaattgatgtactaataattttcatgaatatttaaaa 18608127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 216
Target Start/End: Complemental strand, 7371066 - 7370977
Alignment:
Q  123 taatttctacataaattcatgtacgaataatttccattaatatttaaaaattgtagtaagaaaatatacaatcaaacttaacaaaatatacaca 216  Q
    |||||| || ||||||  ||||||||||||||| || |||||||||||||||    ||| ||||||||||| ||||| ||| ||||||||||||    
T  7371066 taatttatagataaatcaatgtacgaataattttcaataatatttaaaaatt----taaaaaaatatacaaacaaacataataaaatatacaca 7370977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 141 - 221
Target Start/End: Original strand, 12101828 - 12101907
Alignment:
Q  141 atgtacgaataatttccattaatatttaaaaattgtagtaagaaaatatacaatcaaacttaacaaaatatacacatgtta 221  Q
    ||||||||||||||| ||||||||||||||||||||| | | ||| ||||||| ||||| ||| |||||| ||||| ||||    
T  12101828 atgtacgaataattttcattaatatttaaaaattgtaatca-aaattatacaaacaaacataataaaatacacacacgtta 12101907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 95 - 177
Target Start/End: Original strand, 54983469 - 54983551
Alignment:
Q  95 taaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaattgta 177  Q
    ||||||||||  |||||||||||||||||||||| || ||||||  || ||||||||||||  ||||||||||||||||||||    
T  54983469 taaataattttgttatatgctttgataataatttttagataaatcgatatacgaataatttttattaatatttaaaaattgta 54983551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 42381638 - 42381710
Alignment:
Q  95 taaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatattt 167  Q
    ||||||||||  ||||||||||||| |||||||| || ||||||| |||||| ||||||||||||||||||||    
T  42381638 taaataattttgttatatgctttgacaataatttgtagataaattaatgtacaaataatttccattaatattt 42381710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 42398335 - 42398256
Alignment:
Q  95 taaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaatt 174  Q
    ||||||||||| ||||||||||||| | |||||| || ||||||  || ||| ||| ||||| |||||||||||||||||    
T  42398335 taaataatttcattatatgctttgacactaatttgtagataaatcgatctacaaatcatttctattaatatttaaaaatt 42398256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 107 - 174
Target Start/End: Complemental strand, 23693229 - 23693162
Alignment:
Q  107 ttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaatt 174  Q
    ||||||||||||| |||||||| || ||||||  ||||| | |||||||  |||||||||||||||||    
T  23693229 ttatatgctttgacaataatttgtagataaatcgatgtatgtataatttttattaatatttaaaaatt 23693162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 54197132 - 54197053
Alignment:
Q  95 taaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaatt 174  Q
    |||||||||| ||||||||| ||||||||| ||| |  ||||||| || ||  |||||||| ||||||||||| ||||||    
T  54197132 taaataatttttttatatgccttgataatattttgtttataaattaatatatcaataattttcattaatattttaaaatt 54197053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 4965416 - 4965339
Alignment:
Q  95 taaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaa 172  Q
    ||||||||||  |||||| |||||| |||||||| || ||||||  ||| ||||||||||||||||||||||||||||    
T  4965416 taaataattttgttatatactttgacaataatttgtagataaatcgatgcacgaataatttccattaatatttaaaaa 4965339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1993 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold1993
Description:

Target: scaffold1993; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 174
Target Start/End: Complemental strand, 318 - 239
Alignment:
Q  95 taaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaatt 174  Q
    ||||||||||| ||||||  ||||| |||||||| || ||||||  ||| |||||||| |||||||||||||||||||||    
T  318 taaataatttcgttatatagtttgacaataatttgtagataaatcgatgaacgaataaattccattaatatttaaaaatt 239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 96 - 164
Target Start/End: Original strand, 33476043 - 33476111
Alignment:
Q  96 aaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaata 164  Q
    |||||||||| ||||||||||| | |||||||| || ||||||  |||||| |||||||||||||||||    
T  33476043 aaataatttcattatatgctttcacaataatttatagataaatcaatgtaccaataatttccattaata 33476111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 113 - 177
Target Start/End: Original strand, 43019982 - 43020046
Alignment:
Q  113 gctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaattgta 177  Q
    ||||||| ||| |||| || ||||||  ||||||||||||||| |||||||||||||||||||||    
T  43019982 gctttgacaattatttgtaaataaatcgatgtacgaataattttcattaatatttaaaaattgta 43020046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 174
Target Start/End: Complemental strand, 44065178 - 44065125
Alignment:
Q  121 aataatttctacataaattcatgtacgaataatttccattaatatttaaaaatt 174  Q
    |||||||| || ||||||  || |||||||||||||||||||||||||||||||    
T  44065178 aataatttgtagataaatcgatttacgaataatttccattaatatttaaaaatt 44065125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 167
Target Start/End: Original strand, 48420667 - 48420744
Alignment:
Q  90 attgttaaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatattt 167  Q
    |||| ||||||||||  ||||||  ||| |||||||||| || ||||||  ||||||||| ||||| |||||||||||    
T  48420667 attgataaataattttgttatataatttaataataatttatagataaatcgatgtacgaacaattttcattaatattt 48420744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 297897 - 297971
Alignment:
Q  97 aataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaa 172  Q
    ||||||||  ||||||||||||| | |||||| ||||||| |  ||||||||||||||||||||||| ||||||||    
T  297897 aataattttgttatatgctttgacattaatttatacataa-tcgatgtacgaataatttccattaatgtttaaaaa 297971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 21967893 - 21967952
Alignment:
Q  115 tttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaatt 174  Q
    ||||| |||||||| || ||||||| |||||||||||||||| |||||||| ||||||||    
T  21967893 tttgacaataatttgtagataaattgatgtacgaataatttctattaatatataaaaatt 21967952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 174
Target Start/End: Original strand, 21990329 - 21990388
Alignment:
Q  115 tttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaatt 174  Q
    ||||| |||||||| || ||||||| |||||||||||||||| |||||||| ||||||||    
T  21990329 tttgacaataatttgtagataaattgatgtacgaataatttctattaatatataaaaatt 21990388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 174
Target Start/End: Original strand, 21082931 - 21083015
Alignment:
Q  90 attgttaaataatttctttatatgctttgataataatttctacataaattcatgtacgaataatttccattaatatttaaaaatt 174  Q
    |||| ||||||||||  ||||||||| ||| |||||||  || ||||||  ||||| ||||| ||| |||| |||||||||||||    
T  21082931 attgataaataattttgttatatgctatgacaataattcgtagataaatcgatgtatgaatagttttcattgatatttaaaaatt 21083015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 177
Target Start/End: Original strand, 101838 - 101874
Alignment:
Q  141 atgtacgaataatttccattaatatttaaaaattgta 177  Q
    ||||||||||||||||||||||||||| |||||||||    
T  101838 atgtacgaataatttccattaatatttgaaaattgta 101874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 30840929 - 30840897
Alignment:
Q  142 tgtacgaataatttccattaatatttaaaaatt 174  Q
    |||||||||||||| ||||||||||||||||||    
T  30840929 tgtacgaataattttcattaatatttaaaaatt 30840897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University